View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14926_low_4 (Length: 271)

Name: NF14926_low_4
Description: NF14926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14926_low_4
NF14926_low_4
[»] chr3 (27 HSPs)
chr3 (199-271)||(10872751-10872823)
chr3 (199-271)||(331877-331949)
chr3 (217-271)||(23642837-23642890)
chr3 (205-269)||(30519679-30519743)
chr3 (202-269)||(22496943-22497010)
chr3 (216-271)||(29389333-29389388)
chr3 (202-269)||(45736679-45736746)
chr3 (240-271)||(50466843-50466874)
chr3 (205-271)||(3020693-3020758)
chr3 (241-271)||(12744932-12744962)
chr3 (241-271)||(26121570-26121600)
chr3 (241-271)||(37897713-37897743)
chr3 (205-271)||(47334637-47334703)
chr3 (215-269)||(54595795-54595849)
chr3 (205-271)||(54595869-54595934)
chr3 (242-271)||(26244412-26244441)
chr3 (200-269)||(26367461-26367530)
chr3 (205-269)||(41349741-41349806)
chr3 (242-271)||(43898125-43898154)
chr3 (204-269)||(51239324-51239389)
chr3 (241-269)||(3972499-3972527)
chr3 (241-269)||(3994567-3994595)
chr3 (241-269)||(3997351-3997379)
chr3 (219-271)||(24075524-24075576)
chr3 (205-269)||(29565104-29565168)
chr3 (211-271)||(41743591-41743651)
chr3 (205-269)||(52215961-52216025)
[»] chr5 (17 HSPs)
chr5 (205-271)||(71254-71320)
chr5 (215-271)||(11795741-11795797)
chr5 (203-271)||(15549404-15549472)
chr5 (230-271)||(33867945-33867986)
chr5 (211-262)||(28518719-28518770)
chr5 (204-271)||(31691338-31691405)
chr5 (202-269)||(33075146-33075213)
chr5 (241-271)||(3100484-3100514)
chr5 (241-271)||(5984062-5984092)
chr5 (203-269)||(6763778-6763844)
chr5 (211-269)||(13391532-13391590)
chr5 (217-271)||(32398082-32398136)
chr5 (242-271)||(8409742-8409771)
chr5 (204-269)||(15712115-15712180)
chr5 (204-269)||(30893857-30893922)
chr5 (217-269)||(3100412-3100464)
chr5 (215-271)||(14772625-14772681)
[»] chr7 (22 HSPs)
chr7 (202-271)||(21586893-21586962)
chr7 (202-268)||(21886459-21886525)
chr7 (205-271)||(24280900-24280966)
chr7 (203-269)||(25245224-25245290)
chr7 (205-271)||(29205307-29205373)
chr7 (216-271)||(23818430-23818485)
chr7 (215-269)||(2943217-2943271)
chr7 (205-271)||(4089124-4089190)
chr7 (217-271)||(6803452-6803506)
chr7 (211-269)||(21387577-21387635)
chr7 (241-271)||(30138867-30138897)
chr7 (241-271)||(31813442-31813472)
chr7 (199-269)||(38238865-38238935)
chr7 (215-269)||(41404020-41404074)
chr7 (215-269)||(46022629-46022683)
chr7 (208-269)||(22106665-22106726)
chr7 (242-271)||(27942357-27942386)
chr7 (208-269)||(40529625-40529686)
chr7 (242-271)||(43130265-43130294)
chr7 (205-269)||(10095714-10095778)
chr7 (205-269)||(12274804-12274868)
chr7 (241-269)||(23797429-23797457)
[»] chr1 (22 HSPs)
chr1 (214-271)||(13043419-13043476)
chr1 (215-271)||(18353651-18353707)
chr1 (202-269)||(48083496-48083563)
chr1 (211-269)||(6079144-6079202)
chr1 (205-271)||(13048653-13048718)
chr1 (205-271)||(13053650-13053715)
chr1 (217-271)||(34953975-34954029)
chr1 (204-269)||(33400619-33400684)
chr1 (202-266)||(45115254-45115318)
chr1 (210-269)||(46906861-46906920)
chr1 (215-269)||(1409130-1409184)
chr1 (199-269)||(18551342-18551412)
chr1 (215-269)||(24981922-24981976)
chr1 (205-266)||(2349751-2349812)
chr1 (205-270)||(13043347-13043411)
chr1 (242-271)||(26453059-26453088)
chr1 (241-270)||(34491264-34491293)
chr1 (242-271)||(34598941-34598970)
chr1 (202-266)||(8338667-8338731)
chr1 (217-269)||(14967306-14967358)
chr1 (205-269)||(35367559-35367623)
chr1 (241-269)||(42761484-42761512)
[»] chr2 (30 HSPs)
chr2 (215-269)||(27331840-27331894)
chr2 (215-271)||(15859630-15859686)
chr2 (205-269)||(38181755-38181819)
chr2 (216-271)||(38465868-38465923)
chr2 (217-271)||(11342049-11342103)
chr2 (202-271)||(37195044-37195113)
chr2 (205-269)||(3887914-3887978)
chr2 (231-271)||(19951524-19951564)
chr2 (231-271)||(32218655-32218695)
chr2 (203-266)||(19612934-19612997)
chr2 (216-271)||(26003514-26003569)
chr2 (202-269)||(34248496-34248563)
chr2 (215-269)||(1961390-1961444)
chr2 (211-269)||(11093531-11093589)
chr2 (205-271)||(11726491-11726556)
chr2 (205-271)||(15119856-15119922)
chr2 (241-271)||(23377973-23378003)
chr2 (204-266)||(23738313-23738375)
chr2 (215-269)||(31024176-31024230)
chr2 (217-271)||(40204447-40204501)
chr2 (221-271)||(43701433-43701483)
chr2 (215-271)||(7079449-7079505)
chr2 (200-269)||(21183408-21183477)
chr2 (240-269)||(31175111-31175140)
chr2 (242-271)||(32346110-32346139)
chr2 (242-271)||(37396236-37396265)
chr2 (204-269)||(38594425-38594490)
chr2 (204-269)||(38598021-38598086)
chr2 (241-269)||(11153236-11153264)
chr2 (201-269)||(15119768-15119836)
[»] chr4 (27 HSPs)
chr4 (203-268)||(24798209-24798274)
chr4 (202-269)||(20215640-20215707)
chr4 (205-271)||(12168696-12168762)
chr4 (205-271)||(36786145-36786211)
chr4 (215-269)||(55936068-55936122)
chr4 (204-269)||(54164894-54164959)
chr4 (205-269)||(3669551-3669615)
chr4 (203-271)||(35151740-35151808)
chr4 (240-271)||(18423922-18423953)
chr4 (202-269)||(19934719-19934786)
chr4 (200-271)||(24870436-24870507)
chr4 (240-271)||(38298120-38298151)
chr4 (216-271)||(40881506-40881561)
chr4 (241-271)||(3511740-3511770)
chr4 (241-271)||(4484105-4484135)
chr4 (215-269)||(29006840-29006894)
chr4 (211-269)||(33124099-33124157)
chr4 (241-271)||(33377494-33377524)
chr4 (217-271)||(47308121-47308175)
chr4 (215-269)||(52914079-52914133)
chr4 (226-271)||(4370416-4370461)
chr4 (212-269)||(51736212-51736269)
chr4 (203-271)||(36072563-36072631)
chr4 (215-271)||(48603569-48603625)
chr4 (205-269)||(54106470-54106534)
chr4 (215-271)||(55416305-55416361)
chr4 (215-271)||(55935993-55936048)
[»] chr8 (13 HSPs)
chr8 (205-269)||(13964414-13964478)
chr8 (211-271)||(45045456-45045516)
chr8 (221-271)||(9015895-9015945)
chr8 (215-271)||(10117049-10117105)
chr8 (205-269)||(10934684-10934748)
chr8 (205-268)||(23627661-23627724)
chr8 (216-267)||(41753841-41753892)
chr8 (211-264)||(6260694-6260748)
chr8 (241-269)||(5040099-5040127)
chr8 (205-269)||(5888331-5888395)
chr8 (205-269)||(10934598-10934662)
chr8 (201-269)||(24820378-24820445)
chr8 (241-269)||(34326276-34326304)
[»] chr6 (23 HSPs)
chr6 (215-271)||(8449655-8449711)
chr6 (215-271)||(8458459-8458515)
chr6 (203-271)||(11746307-11746375)
chr6 (215-271)||(13281539-13281595)
chr6 (215-271)||(33689234-33689290)
chr6 (204-269)||(15517171-15517236)
chr6 (215-267)||(6263434-6263486)
chr6 (205-269)||(14310602-14310666)
chr6 (199-269)||(11745912-11745983)
chr6 (217-268)||(14031751-14031802)
chr6 (205-271)||(11637165-11637231)
chr6 (205-271)||(15517086-15517151)
chr6 (199-269)||(30397805-30397875)
chr6 (221-271)||(31714614-31714664)
chr6 (205-271)||(34379731-34379796)
chr6 (215-269)||(34379816-34379870)
chr6 (226-271)||(3102155-3102200)
chr6 (242-271)||(10258383-10258412)
chr6 (205-266)||(28555031-28555092)
chr6 (204-269)||(33053759-33053824)
chr6 (209-269)||(14173389-14173449)
chr6 (209-269)||(14177925-14177985)
chr6 (215-271)||(31996504-31996560)
[»] scaffold0149 (1 HSPs)
scaffold0149 (206-269)||(24687-24750)
[»] scaffold0047 (1 HSPs)
scaffold0047 (199-269)||(61152-61222)
[»] scaffold0009 (2 HSPs)
scaffold0009 (215-269)||(145973-146027)
scaffold0009 (241-271)||(146047-146077)
[»] scaffold0340 (1 HSPs)
scaffold0340 (242-271)||(14065-14094)


Alignment Details
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 199 - 271
Target Start/End: Complemental strand, 10872823 - 10872751
Alignment:
Q  199 aacatatacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    ||||||||||| ||| |||||||||| |||| ||||||   ||||||||||||||||||||||||||||||||    
T  10872823 aacatatacaccctccggtcactattataagcaaaaatttatattttagattcattcaattaatgatgtatat 10872751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 271
Target Start/End: Complemental strand, 331949 - 331877
Alignment:
Q  199 aacatatacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    ||||||||||| ||| |||||||||| |||| |||||| |  |||||||||||||||| | ||||||||||||    
T  331949 aacatatacaccctccggtcactattataagcaaaaattaacattttagattcattcattaaatgatgtatat 331877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 23642890 - 23642837
Alignment:
Q  217 tcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    |||||||| |||| |||||||| ||||||||||||| ||||||||||||||||||    
T  23642890 tcactattataagcaaaaatcaatattttagattca-tcaattaatgatgtatat 23642837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 30519743 - 30519679
Alignment:
Q  205 tacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    ||||| |||||||||||||| |||| ||||| ||  |||||||||||||||| | ||||||||||    
T  30519743 tacaccctctggtcactattataagcaaaaaccaacattttagattcattcattaaatgatgtat 30519679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 269
Target Start/End: Original strand, 22496943 - 22497010
Alignment:
Q  202 atatacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||||||| |||  ||||||||| |||| |||||| | ||||||||||||||||| | ||||||||||    
T  22496943 atatacaccctccagtcactattataagcaaaaattaatattttagattcattcattaaatgatgtat 22497010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 271
Target Start/End: Original strand, 29389333 - 29389388
Alignment:
Q  216 gtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    ||||||||| |||| ||||||   |||||||||||| |||||||||||||||||||    
T  29389333 gtcactattataagcaaaaatttatattttagattcgttcaattaatgatgtatat 29389388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 269
Target Start/End: Original strand, 45736679 - 45736746
Alignment:
Q  202 atatacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||||||| ||| |||||||||| |||| |||||||  || |||||||||||||| | ||||||||||    
T  45736679 atatacaccctccggtcactattataagcaaaaatcgatagtttagattcattcattaaatgatgtat 45736746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 240 - 271
Target Start/End: Original strand, 50466843 - 50466874
Alignment:
Q  240 tattttagattcattcaattaatgatgtatat 271  Q
    ||||||||||||||||||||||||||||||||    
T  50466843 tattttagattcattcaattaatgatgtatat 50466874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 271
Target Start/End: Complemental strand, 3020758 - 3020693
Alignment:
Q  205 tacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    ||||||| ||| ||| |||| ||||||||||   ||||||| |||||||||||||||||||||||||    
T  3020758 tacactccctgatcattattataagaaaaaaat-ttattttggattcattcaattaatgatgtatat 3020693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 271
Target Start/End: Original strand, 12744932 - 12744962
Alignment:
Q  241 attttagattcattcaattaatgatgtatat 271  Q
    |||||||||||||||||||||||||||||||    
T  12744932 attttagattcattcaattaatgatgtatat 12744962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 271
Target Start/End: Original strand, 26121570 - 26121600
Alignment:
Q  241 attttagattcattcaattaatgatgtatat 271  Q
    |||||||||||||||||||||||||||||||    
T  26121570 attttagattcattcaattaatgatgtatat 26121600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 271
Target Start/End: Original strand, 37897713 - 37897743
Alignment:
Q  241 attttagattcattcaattaatgatgtatat 271  Q
    |||||||||||||||||||||||||||||||    
T  37897713 attttagattcattcaattaatgatgtatat 37897743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 271
Target Start/End: Original strand, 47334637 - 47334703
Alignment:
Q  205 tacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    ||||||||| ||||| |||| |||| |||| |   ||||||| ||||||||||||||||||||||||    
T  47334637 tacactctccggtcagtattataagcaaaactttgtattttaaattcattcaattaatgatgtatat 47334703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 54595795 - 54595849
Alignment:
Q  215 ggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||||||||| |||| ||||||||  |||||||||||||||| | ||||||||||    
T  54595795 ggtcactattataagcaaaaatcaacattttagattcattcattaaatgatgtat 54595849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 271
Target Start/End: Complemental strand, 54595934 - 54595869
Alignment:
Q  205 tacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    ||||| ||| |||||||||| |||| |||||| || |||||||||||||||| | ||||||||||||    
T  54595934 tacaccctccggtcactattataagtaaaaat-ataattttagattcattcattaaatgatgtatat 54595869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 242 - 271
Target Start/End: Original strand, 26244412 - 26244441
Alignment:
Q  242 ttttagattcattcaattaatgatgtatat 271  Q
    ||||||||||||||||||||||||||||||    
T  26244412 ttttagattcattcaattaatgatgtatat 26244441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 269
Target Start/End: Original strand, 26367461 - 26367530
Alignment:
Q  200 acatatacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||||||||| ||| |||||| | | |||| |||||||  | ||||||||||||||||| ||||||||||    
T  26367461 acatatacaccctccggtcacaaatataagcaaaaatccatgttttagattcattcaataaatgatgtat 26367530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 41349806 - 41349741
Alignment:
Q  205 tacactctctggtcactattttaagaaaaaatc-attattttagattcattcaattaatgatgtat 269  Q
    ||||| ||| |||||||| | |||| ||||||| ||| |||||||| |||||||||||||||||||    
T  41349806 tacaccctccggtcactaatataagcaaaaatccatttttttagatacattcaattaatgatgtat 41349741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 242 - 271
Target Start/End: Original strand, 43898125 - 43898154
Alignment:
Q  242 ttttagattcattcaattaatgatgtatat 271  Q
    ||||||||||||||||||||||||||||||    
T  43898125 ttttagattcattcaattaatgatgtatat 43898154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 269
Target Start/End: Complemental strand, 51239389 - 51239324
Alignment:
Q  204 atacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||||| ||| |||||||| | |||| |||||||  | |||||||| |||||||||||||||||||    
T  51239389 atacaccctccggtcactaatataagcaaaaatctattttttagatacattcaattaatgatgtat 51239324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 3972499 - 3972527
Alignment:
Q  241 attttagattcattcaattaatgatgtat 269  Q
    |||||||||||||||||||||||||||||    
T  3972499 attttagattcattcaattaatgatgtat 3972527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 3994595 - 3994567
Alignment:
Q  241 attttagattcattcaattaatgatgtat 269  Q
    |||||||||||||||||||||||||||||    
T  3994595 attttagattcattcaattaatgatgtat 3994567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 3997379 - 3997351
Alignment:
Q  241 attttagattcattcaattaatgatgtat 269  Q
    |||||||||||||||||||||||||||||    
T  3997379 attttagattcattcaattaatgatgtat 3997351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 24075576 - 24075524
Alignment:
Q  219 actattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    |||||| |||| |||||||   ||||||||||||||||||| |||||||||||    
T  24075576 actattataagcaaaaatctacattttagattcattcaattcatgatgtatat 24075524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 29565104 - 29565168
Alignment:
Q  205 tacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    ||||| ||| |||||||| | |||| |||||||| | |||||||| |||| ||||||||||||||    
T  29565104 tacaccctccggtcactaatataagcaaaaatcaattttttagatacatttaattaatgatgtat 29565168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 271
Target Start/End: Original strand, 41743591 - 41743651
Alignment:
Q  211 ctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    ||||||| |||||| |||| |||||| | |||||||||||| |||| | ||||||||||||    
T  41743591 ctctggttactattataagcaaaaattaatattttagattcgttcattaaatgatgtatat 41743651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 52216025 - 52215961
Alignment:
Q  205 tacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    ||||| ||| |||||||||| |||| ||||||||  |||||||||||| ||| | ||||||||||    
T  52216025 tacaccctccggtcactattataagcaaaaatcaacattttagattcactcattaaatgatgtat 52215961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 271
Target Start/End: Original strand, 71254 - 71320
Alignment:
Q  205 tacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    ||||| ||| |||||||||| |||| |||||||  ||||||||||||||||||||||||||||||||    
T  71254 tacaccctccggtcactattataagcaaaaatctatattttagattcattcaattaatgatgtatat 71320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 11795741 - 11795797
Alignment:
Q  215 ggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    |||||||| | |||| ||||||||  |||||||||||||||||||||||||||||||    
T  11795741 ggtcactaatataagcaaaaatcaacattttagattcattcaattaatgatgtatat 11795797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 15549472 - 15549404
Alignment:
Q  203 tatacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    ||||||| ||| |||||||||| |||  ||||||||  |||||||||||||||||||||| ||||||||    
T  15549472 tatacaccctccggtcactattataaacaaaaatcaacattttagattcattcaattaataatgtatat 15549404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 230 - 271
Target Start/End: Original strand, 33867945 - 33867986
Alignment:
Q  230 aaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    ||||||||||||||||| |||||||||||||||||| |||||    
T  33867945 aaaaaatcattattttatattcattcaattaatgatatatat 33867986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 262
Target Start/End: Original strand, 28518719 - 28518770
Alignment:
Q  211 ctctggtcactattttaagaaaaaatcattattttagattcattcaattaat 262  Q
    |||||||||||||| |||| ||||||||  ||||| ||||||||||||||||    
T  28518719 ctctggtcactattataagcaaaaatcaacattttggattcattcaattaat 28518770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 271
Target Start/End: Complemental strand, 31691405 - 31691338
Alignment:
Q  204 atacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    |||||| ||| | |||||||| |||| ||||||   ||||| ||||||||||||||||||||||||||    
T  31691405 atacacactccgatcactattataagtaaaaatttatatttgagattcattcaattaatgatgtatat 31691338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 269
Target Start/End: Complemental strand, 33075213 - 33075146
Alignment:
Q  202 atatacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    ||||||||  ||||||||||||| |||| |||||| | |||||||| |||||||| | ||||||||||    
T  33075213 atatacaccatctggtcactattataagcaaaaattaatattttaggttcattcattaaatgatgtat 33075146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 271
Target Start/End: Complemental strand, 3100514 - 3100484
Alignment:
Q  241 attttagattcattcaattaatgatgtatat 271  Q
    |||||||||||||||||||||||||||||||    
T  3100514 attttagattcattcaattaatgatgtatat 3100484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 271
Target Start/End: Complemental strand, 5984092 - 5984062
Alignment:
Q  241 attttagattcattcaattaatgatgtatat 271  Q
    |||||||||||||||||||||||||||||||    
T  5984092 attttagattcattcaattaatgatgtatat 5984062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 269
Target Start/End: Complemental strand, 6763844 - 6763778
Alignment:
Q  203 tatacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    ||||||| ||| |||||||| | |||| |||||||  | || |||||||||||||||||||||||||    
T  6763844 tatacaccctccggtcactaatataagcaaaaatccattttctagattcattcaattaatgatgtat 6763778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 269
Target Start/End: Original strand, 13391532 - 13391590
Alignment:
Q  211 ctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||||||||||||| |||| |||| |||   ||||||||||||||||| ||||||||||    
T  13391532 ctctggtcactattataagtaaaagtcaactttttagattcattcaataaatgatgtat 13391590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 32398136 - 32398082
Alignment:
Q  217 tcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    |||||||| |||  |||||||  ||||||| ||||||||||||||||||||||||    
T  32398136 tcactattataaacaaaaatctatattttaaattcattcaattaatgatgtatat 32398082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 242 - 271
Target Start/End: Complemental strand, 8409771 - 8409742
Alignment:
Q  242 ttttagattcattcaattaatgatgtatat 271  Q
    ||||||||||||||||||||||||||||||    
T  8409771 ttttagattcattcaattaatgatgtatat 8409742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 269
Target Start/End: Original strand, 15712115 - 15712180
Alignment:
Q  204 atacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||||||||| ||||| || | |||| |||||||  | |||||||| |||||||||||||||||||    
T  15712115 atacactctccggtcattaatataagcaaaaatccattttttagatacattcaattaatgatgtat 15712180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 269
Target Start/End: Complemental strand, 30893922 - 30893857
Alignment:
Q  204 atacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||||||||  |||||| | | ||||||||||||  | ||||||||||||||||| ||||||||||    
T  30893922 atacactctacggtcacaaatataagaaaaaatccatgttttagattcattcaataaatgatgtat 30893857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 3100412 - 3100464
Alignment:
Q  217 tcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||||||| |||| |||||| |  |||||||||||||||||| ||||||||||    
T  3100412 tcactattataagcaaaaattaacattttagattcattcaataaatgatgtat 3100464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 14772681 - 14772625
Alignment:
Q  215 ggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    |||||||||| |||| |||| |   ||||||||||| ||||||||||||||||||||    
T  14772681 ggtcactattataagcaaaactttatattttagattaattcaattaatgatgtatat 14772625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 202 - 271
Target Start/End: Complemental strand, 21586962 - 21586893
Alignment:
Q  202 atatacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    |||||||| ||  |||| ||||| |||| |||||||| ||||||||||||||||||||||||||||||||    
T  21586962 atatacacccttcggtctctattataagtaaaaatcaatattttagattcattcaattaatgatgtatat 21586893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 268
Target Start/End: Original strand, 21886459 - 21886525
Alignment:
Q  202 atatacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgta 268  Q
    |||||||| ||| ||||| |||| |||| ||||||   |||||||||||||||||||||||||||||    
T  21886459 atatacaccctccggtcattattataagcaaaaatttatattttagattcattcaattaatgatgta 21886525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 271
Target Start/End: Complemental strand, 24280966 - 24280900
Alignment:
Q  205 tacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    ||||||||  |||||||||| |||| |||||||   |||||| ||||||||||||||||||||||||    
T  24280966 tacactcttaggtcactattataagtaaaaatctacattttaaattcattcaattaatgatgtatat 24280900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 269
Target Start/End: Complemental strand, 25245290 - 25245224
Alignment:
Q  203 tatacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    ||||||| ||| |||||||||| |||| ||||||||  |||||||||||||||| | ||||||||||    
T  25245290 tatacaccctccggtcactattataagcaaaaatcaacattttagattcattcattaaatgatgtat 25245224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 271
Target Start/End: Original strand, 29205307 - 29205373
Alignment:
Q  205 tacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    ||||| ||| |||||||||| |||| |||||||| ||||||  ||||||| ||||||||||||||||    
T  29205307 tacacactccggtcactattataagcaaaaatcaatattttttattcattaaattaatgatgtatat 29205373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 271
Target Start/End: Original strand, 23818430 - 23818485
Alignment:
Q  216 gtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    ||||||||| |||| ||||||||  |||||||||||||||| | ||||||||||||    
T  23818430 gtcactattataagcaaaaatcaacattttagattcattcattaaatgatgtatat 23818485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 2943217 - 2943271
Alignment:
Q  215 ggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||||||||| |||| ||||||||  |||||||||||||||| | ||||||||||    
T  2943217 ggtcactattataagcaaaaatcaacattttagattcattcattaaatgatgtat 2943271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 271
Target Start/End: Original strand, 4089124 - 4089190
Alignment:
Q  205 tacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    ||||||||| ||| |||||| |||  |||||||| ||||||| ||||||||| | ||||||||||||    
T  4089124 tacactctccggttactattataaacaaaaatcaatattttatattcattcattaaatgatgtatat 4089190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 6803506 - 6803452
Alignment:
Q  217 tcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    |||||||| |||  |||||||| ||||||| |||||||||||| |||||||||||    
T  6803506 tcactattataaacaaaaatcaatattttaaattcattcaattgatgatgtatat 6803452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 269
Target Start/End: Original strand, 21387577 - 21387635
Alignment:
Q  211 ctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||||||||||| | |||| |||||||  | || |||||||||||||||||||||||||    
T  21387577 ctctggtcactaatataagcaaaaatccattttctagattcattcaattaatgatgtat 21387635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 271
Target Start/End: Complemental strand, 30138897 - 30138867
Alignment:
Q  241 attttagattcattcaattaatgatgtatat 271  Q
    |||||||||||||||||||||||||||||||    
T  30138897 attttagattcattcaattaatgatgtatat 30138867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 271
Target Start/End: Original strand, 31813442 - 31813472
Alignment:
Q  241 attttagattcattcaattaatgatgtatat 271  Q
    |||||||||||||||||||||||||||||||    
T  31813442 attttagattcattcaattaatgatgtatat 31813472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 269
Target Start/End: Complemental strand, 38238935 - 38238865
Alignment:
Q  199 aacatatacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    ||||||||||| ||| |||||||| | |||| |||||||    |||||||| |||||||||||||||||||    
T  38238935 aacatatacaccctccggtcactaatataagcaaaaatctactttttagatacattcaattaatgatgtat 38238865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 41404020 - 41404074
Alignment:
Q  215 ggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||||||||| |||| |||||| || |||||||||||||||| | ||||||||||    
T  41404020 ggtcactattataagcaaaaattatcattttagattcattcattaaatgatgtat 41404074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 46022683 - 46022629
Alignment:
Q  215 ggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||||||||| ||||||||||||   |||||||||||||||| | ||||||||||    
T  46022683 ggtcactattataagaaaaaatctacattttagattcattcattaaatgatgtat 46022629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 269
Target Start/End: Original strand, 22106665 - 22106726
Alignment:
Q  208 actctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    ||||||||||||||| | |||| |||||||  | ||||||||  ||||||||||||||||||    
T  22106665 actctctggtcactaatataagcaaaaatctattttttagatatattcaattaatgatgtat 22106726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 242 - 271
Target Start/End: Original strand, 27942357 - 27942386
Alignment:
Q  242 ttttagattcattcaattaatgatgtatat 271  Q
    ||||||||||||||||||||||||||||||    
T  27942357 ttttagattcattcaattaatgatgtatat 27942386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 269
Target Start/End: Complemental strand, 40529686 - 40529625
Alignment:
Q  208 actctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    ||||||||||||||| | |||| |||||||  | ||||||||  ||||||||||||||||||    
T  40529686 actctctggtcactaatataagcaaaaatctattttttagatatattcaattaatgatgtat 40529625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 242 - 271
Target Start/End: Original strand, 43130265 - 43130294
Alignment:
Q  242 ttttagattcattcaattaatgatgtatat 271  Q
    ||||||||||||||||||||||||||||||    
T  43130265 ttttagattcattcaattaatgatgtatat 43130294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 10095714 - 10095778
Alignment:
Q  205 tacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    ||||| ||| |||||||||| |||| |||||| |  |||||||||||||||| | ||||||||||    
T  10095714 tacaccctccggtcactattataagcaaaaattaacattttagattcattcattaaatgatgtat 10095778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 12274804 - 12274868
Alignment:
Q  205 tacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    ||||| |||||||||||||| |||| |||||||   ||||||  |||||||||| ||||||||||    
T  12274804 tacaccctctggtcactattataagcaaaaatccacattttatgttcattcaataaatgatgtat 12274868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 23797457 - 23797429
Alignment:
Q  241 attttagattcattcaattaatgatgtat 269  Q
    |||||||||||||||||||||||||||||    
T  23797457 attttagattcattcaattaatgatgtat 23797429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 13043476 - 13043419
Alignment:
Q  214 tggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    ||||||||||| |||| |||||| | ||||||||||||||||||||||||||||||||    
T  13043476 tggtcactattataagtaaaaattaatattttagattcattcaattaatgatgtatat 13043419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 18353707 - 18353651
Alignment:
Q  215 ggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    |||||||||| |||| ||||||||| ||||||||||||||||||||||||| |||||    
T  18353707 ggtcactattataagcaaaaatcataattttagattcattcaattaatgatatatat 18353651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 202 - 269
Target Start/End: Original strand, 48083496 - 48083563
Alignment:
Q  202 atatacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||||||| |||||||||||||| |||| |||||| | |||||||| |||||||| | ||||||||||    
T  48083496 atatacaccctctggtcactattataagcaaaaattaatattttaggttcattcattaaatgatgtat 48083563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 269
Target Start/End: Complemental strand, 6079202 - 6079144
Alignment:
Q  211 ctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||||||||||||| ||||||||||||    ||||||||||||||||| ||||||||||    
T  6079202 ctctggtcactattataagaaaaaatccaccttttagattcattcaataaatgatgtat 6079144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 271
Target Start/End: Original strand, 13048653 - 13048718
Alignment:
Q  205 tacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    ||||| || |||||||||||  ||| |||||| | ||||||||||||||||||||||||||||||||    
T  13048653 tacaccctttggtcactatta-aagcaaaaattaatattttagattcattcaattaatgatgtatat 13048718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 271
Target Start/End: Original strand, 13053650 - 13053715
Alignment:
Q  205 tacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    ||||| || |||||||||||  ||| |||||| | ||||||||||||||||||||||||||||||||    
T  13053650 tacaccctttggtcactatta-aagcaaaaattaatattttagattcattcaattaatgatgtatat 13053715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 34954029 - 34953975
Alignment:
Q  217 tcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    |||||||| |||| ||||||   ||||||||||||||||||||||||||||||||    
T  34954029 tcactattataagcaaaaatttatattttagattcattcaattaatgatgtatat 34953975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 269
Target Start/End: Original strand, 33400619 - 33400684
Alignment:
Q  204 atacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||||||||||||||| |||| ||||||||||||   ||||||| |||||||| | ||||||||||    
T  33400619 atacactctctggtcattattataagaaaaaatctaaattttaggttcattcagtaaatgatgtat 33400684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 45115318 - 45115254
Alignment:
Q  202 atatacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatg 266  Q
    |||||||| ||| |||||||||| |||| |||||||   |||||||||||||||| |||||||||    
T  45115318 atatacaccctccggtcactattataagcaaaaatctacattttagattcattcatttaatgatg 45115254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 269
Target Start/End: Original strand, 46906861 - 46906920
Alignment:
Q  210 tctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||| |||||||||| |||| |||||||  ||||||||||||||||| | ||||||||||    
T  46906861 tctccggtcactattataagcaaaaatctatattttagattcattcattaaatgatgtat 46906920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 1409184 - 1409130
Alignment:
Q  215 ggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||||||||| |||| |||||| ||  ||||||||||||||||| ||||||||||    
T  1409184 ggtcactattataagcaaaaattatctttttagattcattcaataaatgatgtat 1409130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 269
Target Start/End: Complemental strand, 18551412 - 18551342
Alignment:
Q  199 aacatatacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||| ||||||||| ||||||||||| |||  |||||| |  |||||||||||||||||  ||||||||||    
T  18551412 aacaaatacactctttggtcactattataaataaaaattaacattttagattcattcaacaaatgatgtat 18551342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 24981976 - 24981922
Alignment:
Q  215 ggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||||||||| |||| ||||||||  |||||||||||||||| | ||||||||||    
T  24981976 ggtcactattataagcaaaaatcaacattttagattcattcattaaatgatgtat 24981922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 266
Target Start/End: Original strand, 2349751 - 2349812
Alignment:
Q  205 tacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatg 266  Q
    |||||||||||||||||| | |||  |||||||  | |||||||| ||||||||||||||||    
T  2349751 tacactctctggtcactaatataaacaaaaatccattttttagatacattcaattaatgatg 2349812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 270
Target Start/End: Original strand, 13043347 - 13043411
Alignment:
Q  205 tacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtata 270  Q
    ||||| ||||||||||||||  ||| |||||| | ||||||||||| ||| |||||||||||||||    
T  13043347 tacaccctctggtcactatta-aagcaaaaattaatattttagatttatttaattaatgatgtata 13043411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 242 - 271
Target Start/End: Complemental strand, 26453088 - 26453059
Alignment:
Q  242 ttttagattcattcaattaatgatgtatat 271  Q
    ||||||||||||||||||||||||||||||    
T  26453088 ttttagattcattcaattaatgatgtatat 26453059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 241 - 270
Target Start/End: Complemental strand, 34491293 - 34491264
Alignment:
Q  241 attttagattcattcaattaatgatgtata 270  Q
    ||||||||||||||||||||||||||||||    
T  34491293 attttagattcattcaattaatgatgtata 34491264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 242 - 271
Target Start/End: Complemental strand, 34598970 - 34598941
Alignment:
Q  242 ttttagattcattcaattaatgatgtatat 271  Q
    ||||||||||||||||||||||||||||||    
T  34598970 ttttagattcattcaattaatgatgtatat 34598941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 266
Target Start/End: Original strand, 8338667 - 8338731
Alignment:
Q  202 atatacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatg 266  Q
    ||||| || ||| |||||||||| |||| |||||||   |||||||||||||||| |||||||||    
T  8338667 atatataccctccggtcactattataagcaaaaatctacattttagattcattcatttaatgatg 8338731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 14967358 - 14967306
Alignment:
Q  217 tcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||||||| |||| ||||||||  |||||||||||||||| | ||||||||||    
T  14967358 tcactattataagcaaaaatcaacattttagattcattcattaaatgatgtat 14967306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 35367623 - 35367559
Alignment:
Q  205 tacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    ||||| ||| |||||||| | |||| |||||||  | |||||||| |||||||||||||||||||    
T  35367623 tacaccctccggtcactactataagcaaaaatccattttttagatacattcaattaatgatgtat 35367559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 42761484 - 42761512
Alignment:
Q  241 attttagattcattcaattaatgatgtat 269  Q
    |||||||||||||||||||||||||||||    
T  42761484 attttagattcattcaattaatgatgtat 42761512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 27331894 - 27331840
Alignment:
Q  215 ggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||||||||| |||| ||||||||  |||||||||||||||||||||||||||||    
T  27331894 ggtcactattataagcaaaaatcaacattttagattcattcaattaatgatgtat 27331840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 15859686 - 15859630
Alignment:
Q  215 ggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    ||||| |||| |||| |||||||  ||||||||||||||||||||||||||||||||    
T  15859686 ggtcattattataagcaaaaatctatattttagattcattcaattaatgatgtatat 15859630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 38181755 - 38181819
Alignment:
Q  205 tacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||||||| |||||| |||| |||| |||||||| ||||||||||||||||| | ||||||||||    
T  38181755 tacactctttggtcattattataagcaaaaatcaatattttagattcattcattaaatgatgtat 38181819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 38465923 - 38465868
Alignment:
Q  216 gtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    ||||||||| |||| |||||||   |||||||||||||||||||||||||||||||    
T  38465923 gtcactattgtaagcaaaaatctacattttagattcattcaattaatgatgtatat 38465868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 11342103 - 11342049
Alignment:
Q  217 tcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    |||||||| |||| |||||||  ||||||||||||||| ||||||||||||||||    
T  11342103 tcactattataagcaaaaatctatattttagattcatttaattaatgatgtatat 11342049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 271
Target Start/End: Original strand, 37195044 - 37195113
Alignment:
Q  202 atatacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    |||||||| ||| |||||||| | |||| |||| | | ||||||||||||| ||||||||||||||||||    
T  37195044 atatacaccctccggtcactaatataagcaaaagttaatattttagattcactcaattaatgatgtatat 37195113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 3887978 - 3887914
Alignment:
Q  205 tacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    ||||| ||| |||||||| | |||| |||||||||  |||||||| |||||||||||||||||||    
T  3887978 tacaccctccggtcactaatataagcaaaaatcatctttttagatacattcaattaatgatgtat 3887914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 231 - 271
Target Start/End: Complemental strand, 19951564 - 19951524
Alignment:
Q  231 aaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    |||||||| ||||||| ||||||||||||||||||||||||    
T  19951564 aaaaatcaatattttatattcattcaattaatgatgtatat 19951524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 231 - 271
Target Start/End: Complemental strand, 32218695 - 32218655
Alignment:
Q  231 aaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    |||| ||| ||||||||||||||||||||||||||||||||    
T  32218695 aaaattcaatattttagattcattcaattaatgatgtatat 32218655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 266
Target Start/End: Original strand, 19612934 - 19612997
Alignment:
Q  203 tatacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatg 266  Q
    ||||||| ||| |||||||| | |||| |||||||  ||||||||||||||||| |||||||||    
T  19612934 tatacaccctccggtcactaatataagcaaaaatctatattttagattcattcatttaatgatg 19612997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 26003569 - 26003514
Alignment:
Q  216 gtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    |||||| || |||| |||||||   |||||||||||||||||||||||||||||||    
T  26003569 gtcacttttataagcaaaaatctacattttagattcattcaattaatgatgtatat 26003514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 269
Target Start/End: Complemental strand, 34248563 - 34248496
Alignment:
Q  202 atatacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||||||| |||||||||||| | |||| |||||||    |||||||| |||||||||||||||||||    
T  34248563 atatacaccctctggtcactaatataagcaaaaatccactttttagatacattcaattaatgatgtat 34248496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 1961444 - 1961390
Alignment:
Q  215 ggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||||||||| |||| ||||||||  |||||||||||||||| | ||||||||||    
T  1961444 ggtcactattataagcaaaaatcaacattttagattcattcattaaatgatgtat 1961390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 269
Target Start/End: Original strand, 11093531 - 11093589
Alignment:
Q  211 ctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    ||||| |||||||| |||| |||||||| ||||||||||| ||||| | ||||||||||    
T  11093531 ctctgatcactattataagtaaaaatcaatattttagattgattcattaaatgatgtat 11093589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 271
Target Start/End: Original strand, 11726491 - 11726556
Alignment:
Q  205 tacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    ||||| ||| |||||||||| |||| |||||| |  |||||||||||||||||| ||||||||||||    
T  11726491 tacaccctccggtcactattataagcaaaaataac-attttagattcattcaatcaatgatgtatat 11726556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 271
Target Start/End: Complemental strand, 15119922 - 15119856
Alignment:
Q  205 tacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    ||||| ||| |||||||||| |||| |||||||   |||||||||| ||||| ||||||||||||||    
T  15119922 tacaccctccggtcactattataagcaaaaatctacattttagatttattcatttaatgatgtatat 15119856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 271
Target Start/End: Original strand, 23377973 - 23378003
Alignment:
Q  241 attttagattcattcaattaatgatgtatat 271  Q
    |||||||||||||||||||||||||||||||    
T  23377973 attttagattcattcaattaatgatgtatat 23378003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 266
Target Start/End: Original strand, 23738313 - 23738375
Alignment:
Q  204 atacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatg 266  Q
    ||||||||||||||||||||| |||| ||||||    |||||||||||||| ||| |||||||    
T  23738313 atacactctctggtcactattataagtaaaaattgacattttagattcatttaataaatgatg 23738375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 31024176 - 31024230
Alignment:
Q  215 ggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||||||||| |||| ||||||||  |||||||||||||||| | ||||||||||    
T  31024176 ggtcactattataagcaaaaatcaacattttagattcattcattaaatgatgtat 31024230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 40204447 - 40204501
Alignment:
Q  217 tcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    |||||||| |||| |||||||  |||| || ||||||||||||||||||||||||    
T  40204447 tcactattataagcaaaaatctatattatacattcattcaattaatgatgtatat 40204501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 271
Target Start/End: Complemental strand, 43701483 - 43701433
Alignment:
Q  221 tattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    |||| |||| ||||||| | |||||||||| ||||||||||||||||||||    
T  43701483 tattataagtaaaaatcttcattttagatttattcaattaatgatgtatat 43701433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 7079505 - 7079449
Alignment:
Q  215 ggtcactattttaagaaaaaatcat-tattttagattcattcaattaatgatgtatat 271  Q
    |||||||||| |||| ||||| ||| ||||||||||||||| ||||||||||||||||    
T  7079505 ggtcactattataagcaaaaa-catatattttagattcatttaattaatgatgtatat 7079449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 269
Target Start/End: Complemental strand, 21183477 - 21183408
Alignment:
Q  200 acatatacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||||||||  ||| ||||||| || |||| ||||||||  |||||||||||||||| | ||||||||||    
T  21183477 acatatacatcctccggtcactgttataagcaaaaatcaacattttagattcattcattaaatgatgtat 21183408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 240 - 269
Target Start/End: Original strand, 31175111 - 31175140
Alignment:
Q  240 tattttagattcattcaattaatgatgtat 269  Q
    ||||||||||||||||||||||||||||||    
T  31175111 tattttagattcattcaattaatgatgtat 31175140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 242 - 271
Target Start/End: Original strand, 32346110 - 32346139
Alignment:
Q  242 ttttagattcattcaattaatgatgtatat 271  Q
    ||||||||||||||||||||||||||||||    
T  32346110 ttttagattcattcaattaatgatgtatat 32346139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 242 - 271
Target Start/End: Original strand, 37396236 - 37396265
Alignment:
Q  242 ttttagattcattcaattaatgatgtatat 271  Q
    ||||||||||||||||||||||||||||||    
T  37396236 ttttagattcattcaattaatgatgtatat 37396265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 269
Target Start/End: Complemental strand, 38594490 - 38594425
Alignment:
Q  204 atacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||||| ||| |||||||| | |||| |||||||  | |||||||| |||||||||||||||||||    
T  38594490 atacaccctccggtcactaatataagcaaaaatctattttttagatacattcaattaatgatgtat 38594425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 269
Target Start/End: Complemental strand, 38598086 - 38598021
Alignment:
Q  204 atacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||||| ||| |||||||| | |||| |||||||  | |||||||| |||||||||||||||||||    
T  38598086 atacaccctccggtcactaatataagcaaaaatctattttttagatacattcaattaatgatgtat 38598021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 11153236 - 11153264
Alignment:
Q  241 attttagattcattcaattaatgatgtat 269  Q
    |||||||||||||||||||||||||||||    
T  11153236 attttagattcattcaattaatgatgtat 11153264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 269
Target Start/End: Original strand, 15119768 - 15119836
Alignment:
Q  201 catatacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    ||||||||| ||  |||||||||| |||| |||||| |  |||||||||||||||| | ||||||||||    
T  15119768 catatacacccttcggtcactattataagcaaaaattaacattttagattcattcattaaatgatgtat 15119836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 268
Target Start/End: Complemental strand, 24798274 - 24798209
Alignment:
Q  203 tatacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgta 268  Q
    |||||||||||||||||||||| |||| |||||| | ||||||| ||||||||| | |||||||||    
T  24798274 tatacactctctggtcactattataagcaaaaattaatattttaaattcattcattaaatgatgta 24798209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 202 - 269
Target Start/End: Complemental strand, 20215707 - 20215640
Alignment:
Q  202 atatacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||||||| |||| |||||||||||||| |||| |   ||||||||||||||||||| ||||||||||    
T  20215707 atatacaccctctagtcactattttaagcaaaagttgatattttagattcattcaataaatgatgtat 20215640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 271
Target Start/End: Complemental strand, 12168762 - 12168696
Alignment:
Q  205 tacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    ||||||||| ||||||| || |||| |||||| || |||||||||||||||| | ||||||||||||    
T  12168762 tacactctcgggtcactgttataagtaaaaatgatcattttagattcattcattaaatgatgtatat 12168696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 271
Target Start/End: Original strand, 36786145 - 36786211
Alignment:
Q  205 tacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    ||||| ||| |||| ||||| |||  ||||||||  |||||||||||||||||||||||||||||||    
T  36786145 tacaccctccggtccctattataaacaaaaatcaacattttagattcattcaattaatgatgtatat 36786211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 55936122 - 55936068
Alignment:
Q  215 ggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||||||||| |||| |||||||| ||||||||||||||||| | ||||||||||    
T  55936122 ggtcactattataagcaaaaatcaatattttagattcattcattaaatgatgtat 55936068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 269
Target Start/End: Complemental strand, 54164959 - 54164894
Alignment:
Q  204 atacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||||| ||| |||||||||| |||| |||||||  | ||||||||||||||||| ||||||||||    
T  54164959 atacaccctccggtcactattataagcaaaaatctattttttagattcattcaataaatgatgtat 54164894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 3669551 - 3669615
Alignment:
Q  205 tacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    ||||| |||||||||||||| |||| ||| ||   ||||||||||||||||||||||||| ||||    
T  3669551 tacaccctctggtcactattataagcaaatatttatattttagattcattcaattaatgacgtat 3669615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 35151808 - 35151740
Alignment:
Q  203 tatacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    ||||||| |||||||||||||| |||  |||| |   |||||||||||||||||||| |||||||||||    
T  35151808 tatacacgctctggtcactattataaacaaaactttgtattttagattcattcaattgatgatgtatat 35151740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 240 - 271
Target Start/End: Original strand, 18423922 - 18423953
Alignment:
Q  240 tattttagattcattcaattaatgatgtatat 271  Q
    ||||||||||||||||||||||||||||||||    
T  18423922 tattttagattcattcaattaatgatgtatat 18423953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 269
Target Start/End: Complemental strand, 19934786 - 19934719
Alignment:
Q  202 atatacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||||||| ||| | |||||||| |||| |||||||  | ||||||||||||||||| ||||||||||    
T  19934786 atatacaccctccgatcactattataagcaaaaatctattttttagattcattcaataaatgatgtat 19934719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 271
Target Start/End: Complemental strand, 24870507 - 24870436
Alignment:
Q  200 acatatacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    ||||||| || ||||||| |||||| |||||||| |||  || |||||| ||||||||||||| ||||||||    
T  24870507 acatatataccctctggttactattataagaaaatatctatagtttagaatcattcaattaattatgtatat 24870436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 240 - 271
Target Start/End: Original strand, 38298120 - 38298151
Alignment:
Q  240 tattttagattcattcaattaatgatgtatat 271  Q
    ||||||||||||||||||||||||||||||||    
T  38298120 tattttagattcattcaattaatgatgtatat 38298151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 40881561 - 40881506
Alignment:
Q  216 gtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    ||||||||| |||  ||||||||  | |||||||||||||||||||||||||||||    
T  40881561 gtcactattataattaaaaatcaacactttagattcattcaattaatgatgtatat 40881506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 271
Target Start/End: Original strand, 3511740 - 3511770
Alignment:
Q  241 attttagattcattcaattaatgatgtatat 271  Q
    |||||||||||||||||||||||||||||||    
T  3511740 attttagattcattcaattaatgatgtatat 3511770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 271
Target Start/End: Original strand, 4484105 - 4484135
Alignment:
Q  241 attttagattcattcaattaatgatgtatat 271  Q
    |||||||||||||||||||||||||||||||    
T  4484105 attttagattcattcaattaatgatgtatat 4484135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 29006840 - 29006894
Alignment:
Q  215 ggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||||||||| |||| |||||||  | ||||||||||||||||| ||||||||||    
T  29006840 ggtcactattataagcaaaaatctattttttagattcattcaataaatgatgtat 29006894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 269
Target Start/End: Complemental strand, 33124157 - 33124099
Alignment:
Q  211 ctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    ||||||||||| ||||||| |||||| |  |||||| |||||||||||||||| |||||    
T  33124157 ctctggtcactcttttaagcaaaaattaacattttacattcattcaattaatgttgtat 33124099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 271
Target Start/End: Complemental strand, 33377524 - 33377494
Alignment:
Q  241 attttagattcattcaattaatgatgtatat 271  Q
    |||||||||||||||||||||||||||||||    
T  33377524 attttagattcattcaattaatgatgtatat 33377494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 47308121 - 47308175
Alignment:
Q  217 tcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    |||||||| |||| ||||||||  ||||| |||||||||| ||||||||||||||    
T  47308121 tcactattataagcaaaaatcaacattttggattcattcatttaatgatgtatat 47308175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 52914133 - 52914079
Alignment:
Q  215 ggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||||||||| |||| |||||| | ||||||||||||||||| | ||||||||||    
T  52914133 ggtcactattataagcaaaaattaatattttagattcattcattaaatgatgtat 52914079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 4370416 - 4370461
Alignment:
Q  226 taagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    |||| |||||||  ||||||||||||||||||| ||||||||||||    
T  4370416 taagcaaaaatccatattttagattcattcaataaatgatgtatat 4370461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 51736212 - 51736269
Alignment:
Q  212 tctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||| ||| ||||||||| |||||| | ||| ||||||||||||||| ||||||||||    
T  51736212 tctgttcattattttaagcaaaaattaatatattagattcattcaataaatgatgtat 51736269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 271
Target Start/End: Original strand, 36072563 - 36072631
Alignment:
Q  203 tatacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    ||||||| ||| |||||||||| |||| |||| |    ||||||||||||||||||| |||||||||||    
T  36072563 tatacaccctccggtcactattataagcaaaattttgcattttagattcattcaatttatgatgtatat 36072631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 48603569 - 48603625
Alignment:
Q  215 ggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    |||||||||| |||| || ||||  ||||||||||| ||||||||||||||| ||||    
T  48603569 ggtcactattataagcaagaatctatattttagatttattcaattaatgatgcatat 48603625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 54106470 - 54106534
Alignment:
Q  205 tacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    ||||||||| |||||| | | |||| ||||||   ||||||||||||||||||| ||||||||||    
T  54106470 tacactctccggtcacaaatataagcaaaaattcatattttagattcattcaataaatgatgtat 54106534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 55416305 - 55416361
Alignment:
Q  215 ggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    ||||| |||| |||| ||||||   ||||| ||||||||||||||||||||||||||    
T  55416305 ggtcattattataagtaaaaatttatatttgagattcattcaattaatgatgtatat 55416361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 55935993 - 55936048
Alignment:
Q  215 ggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    |||||||||| |||| ||||| ||| |||||||||||||||| | ||||||||||||    
T  55935993 ggtcactattataagcaaaaa-cataattttagattcattcattaaatgatgtatat 55936048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 13964414 - 13964478
Alignment:
Q  205 tacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    ||||| |||||||||||||| |||| ||||||||  |||||| ||||||||||| ||||||||||    
T  13964414 tacaccctctggtcactattataagcaaaaatcaacattttaaattcattcaataaatgatgtat 13964478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 211 - 271
Target Start/End: Complemental strand, 45045516 - 45045456
Alignment:
Q  211 ctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    ||||| |||||||| |||  |||||||  ||||||||||||||||||||||||||||||||    
T  45045516 ctctgatcactattataaacaaaaatctatattttagattcattcaattaatgatgtatat 45045456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 271
Target Start/End: Complemental strand, 9015945 - 9015895
Alignment:
Q  221 tattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    |||| |||| |||||||  ||||||||||||||||||||||||||||||||    
T  9015945 tattataagtaaaaatctatattttagattcattcaattaatgatgtatat 9015895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 10117105 - 10117049
Alignment:
Q  215 ggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    |||||||||| |||| ||||||    |||||||||||||||||||||||||||||||    
T  10117105 ggtcactattataagcaaaaatttacattttagattcattcaattaatgatgtatat 10117049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 10934748 - 10934684
Alignment:
Q  205 tacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    ||||| ||| |||||||||| |||| ||||||||  |||||||||||||||| | ||||||||||    
T  10934748 tacaccctccggtcactattataagcaaaaatcaacattttagattcattcattaaatgatgtat 10934684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 268
Target Start/End: Original strand, 23627661 - 23627724
Alignment:
Q  205 tacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgta 268  Q
    ||||| ||| |||||||||| |||| |||||||  ||||||||||| ||||| |||||||||||    
T  23627661 tacaccctccggtcactattataagcaaaaatctgtattttagatttattcatttaatgatgta 23627724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 41753892 - 41753841
Alignment:
Q  216 gtcactattttaagaaaaaatcattattttagattcattcaattaatgatgt 267  Q
    ||||||||| |||  |||||| | ||||||||||||||||||||||||||||    
T  41753892 gtcactattataaacaaaaattaatattttagattcattcaattaatgatgt 41753841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 6260748 - 6260694
Alignment:
Q  211 ctctggtcactattttaagaaaaaat-cattattttagattcattcaattaatga 264  Q
    |||||||||||||| |||| |||||| |||| ||||||||||||||||| |||||    
T  6260748 ctctggtcactattataagcaaaaattcatttttttagattcattcaataaatga 6260694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 5040099 - 5040127
Alignment:
Q  241 attttagattcattcaattaatgatgtat 269  Q
    |||||||||||||||||||||||||||||    
T  5040099 attttagattcattcaattaatgatgtat 5040127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 5888331 - 5888395
Alignment:
Q  205 tacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    ||||| |||||||||||||| |||| |||||| |   ||||||||||||||| | ||||||||||    
T  5888331 tacacgctctggtcactattataagcaaaaattaacgttttagattcattcattaaatgatgtat 5888395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 10934598 - 10934662
Alignment:
Q  205 tacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    ||||| ||| |||||||||| |||| ||||| |  ||||||| ||||||| ||||||||||||||    
T  10934598 tacaccctccggtcactattataagcaaaaaactatattttacattcatttaattaatgatgtat 10934662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 269
Target Start/End: Complemental strand, 24820445 - 24820378
Alignment:
Q  201 catatacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    ||||||||| ||| |||||||||| |||| ||||||  |  ||||||||||||||||| ||||||||||    
T  24820445 catatacac-ctccggtcactattataagcaaaaattctctttttagattcattcaataaatgatgtat 24820378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 34326276 - 34326304
Alignment:
Q  241 attttagattcattcaattaatgatgtat 269  Q
    |||||||||||||||||||||||||||||    
T  34326276 attttagattcattcaattaatgatgtat 34326304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 8449711 - 8449655
Alignment:
Q  215 ggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    |||||||||| |||| |||||| | ||||||||||||||||||||||||||| ||||    
T  8449711 ggtcactattataagcaaaaattaatattttagattcattcaattaatgatgcatat 8449655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 8458515 - 8458459
Alignment:
Q  215 ggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    |||||||||| |||| |||||| | ||||||||||||||||||||||||||| ||||    
T  8458515 ggtcactattataagcaaaaattaatattttagattcattcaattaatgatgcatat 8458459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 11746375 - 11746307
Alignment:
Q  203 tatacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    ||||||| ||||||||||| || ||| |||||||    |||||||||||||||||||||||||||||||    
T  11746375 tatacaccctctggtcactgttataaaaaaaaatttacattttagattcattcaattaatgatgtatat 11746307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 13281539 - 13281595
Alignment:
Q  215 ggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    |||||||||| |||| |||||||   |||||||||||||||||||||||||||||||    
T  13281539 ggtcactattataagcaaaaatctagattttagattcattcaattaatgatgtatat 13281595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 33689234 - 33689290
Alignment:
Q  215 ggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    |||||||||| |||| |||||||| ||||||| ||||||||||||||| ||||||||    
T  33689234 ggtcactattataagcaaaaatcaatattttatattcattcaattaataatgtatat 33689290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 269
Target Start/End: Complemental strand, 15517236 - 15517171
Alignment:
Q  204 atacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||||||||  ||||| |||| |||| |||||||| ||||||||||||||||| | ||||||||||    
T  15517236 atacactctacggtcattattataagcaaaaatcaatattttagattcattcattaaatgatgtat 15517171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 6263486 - 6263434
Alignment:
Q  215 ggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgt 267  Q
    |||||||||| ||| |||||||||||||||||||||| |||| | ||||||||    
T  6263486 ggtcactattataataaaaaatcattattttagattccttcattaaatgatgt 6263434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 14310666 - 14310602
Alignment:
Q  205 tacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    ||||| ||| |||||||| | |||| |||||||  ||||||||||||||||| ||||||||||||    
T  14310666 tacaccctccggtcactaatataagcaaaaatctgtattttagattcattcatttaatgatgtat 14310602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 269
Target Start/End: Original strand, 11745912 - 11745983
Alignment:
Q  199 aacatatacactctctggtcactattttaagaaaaa-atcattattttagattcattcaattaatgatgtat 269  Q
    ||||||||||| || |||| |||||| |||| |||| |||| ||||||||||||||||| | ||||||||||    
T  11745912 aacatatacaccctttggttactattataagcaaaatatcaatattttagattcattcattaaatgatgtat 11745983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 268
Target Start/End: Complemental strand, 14031802 - 14031751
Alignment:
Q  217 tcactattttaagaaaaaatcattattttagattcattcaattaatgatgta 268  Q
    |||| ||| |||| |||||||  |||||||||||||||||||||||||||||    
T  14031802 tcacaattataagtaaaaatctatattttagattcattcaattaatgatgta 14031751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 271
Target Start/End: Original strand, 11637165 - 11637231
Alignment:
Q  205 tacactctctggtcactattttaagaaaaaatcatta--ttttagattcattcaattaatgatgtatat 271  Q
    ||||||||| |||||||||| |||| ||||  |||||  ||||| ||||||||||||||||||||||||    
T  11637165 tacactctccggtcactattataagcaaaa--cattacattttaaattcattcaattaatgatgtatat 11637231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 271
Target Start/End: Original strand, 15517086 - 15517151
Alignment:
Q  205 tacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    ||||| ||| |||||||||| |||| ||||| ||| |||||||||||||||| | ||||||||||||    
T  15517086 tacaccctccggtcactattataagcaaaaa-cataattttagattcattcattaaatgatgtatat 15517151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 269
Target Start/End: Complemental strand, 30397875 - 30397805
Alignment:
Q  199 aacatatacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    ||||| ||||| ||| |||||||| | |||| |||||||  | |||||||| |||||||||||||||||||    
T  30397875 aacatgtacaccctccggtcactaatataagcaaaaatcccttttttagatacattcaattaatgatgtat 30397805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 271
Target Start/End: Complemental strand, 31714664 - 31714614
Alignment:
Q  221 tattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    |||| ||||||||||||   ||||||| |||||||||||||||||||||||    
T  31714664 tattataagaaaaaatctacattttaggttcattcaattaatgatgtatat 31714614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 271
Target Start/End: Original strand, 34379731 - 34379796
Alignment:
Q  205 tacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    ||||| ||| |||||||||| |||| ||||| ||| |||||||||||||||| | ||||||||||||    
T  34379731 tacaccctccggtcactattataagcaaaaa-cataattttagattcattcattaaatgatgtatat 34379796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 34379870 - 34379816
Alignment:
Q  215 ggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||||||||| |||| ||||||||  |||||||||||||||| | ||||||||||    
T  34379870 ggtcactattataagcaaaaatcaacattttagattcattcattaaatgatgtat 34379816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 3102155 - 3102200
Alignment:
Q  226 taagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    |||| ||||||||||| |||||||| ||| ||||||||||||||||    
T  3102155 taagcaaaaatcattactttagatttatttaattaatgatgtatat 3102200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 242 - 271
Target Start/End: Complemental strand, 10258412 - 10258383
Alignment:
Q  242 ttttagattcattcaattaatgatgtatat 271  Q
    ||||||||||||||||||||||||||||||    
T  10258412 ttttagattcattcaattaatgatgtatat 10258383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 266
Target Start/End: Complemental strand, 28555092 - 28555031
Alignment:
Q  205 tacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatg 266  Q
    ||||| |||||||||||||| |||| |||||||   |||||||||||||| | |||||||||    
T  28555092 tacaccctctggtcactattataagcaaaaatctacattttagattcatttatttaatgatg 28555031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 269
Target Start/End: Original strand, 33053759 - 33053824
Alignment:
Q  204 atacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||||| ||| |||||| | | ||||||||||||  | ||||||||||||||||| ||||||||||    
T  33053759 atacaccctccggtcacaaatataagaaaaaatctatgttttagattcattcaataaatgatgtat 33053824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 269
Target Start/End: Original strand, 14173389 - 14173449
Alignment:
Q  209 ctctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||||||||||||||| |||| |||||||    ||||||||||||||||| ||||| ||||    
T  14173389 ctctctggtcactattataagcaaaaatctaatttttagattcattcaataaatgaagtat 14173449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 269
Target Start/End: Original strand, 14177925 - 14177985
Alignment:
Q  209 ctctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||||||||||||||| |||| |||||||    ||||||||||||||||| ||||| ||||    
T  14177925 ctctctggtcactattataagcaaaaatctaatttttagattcattcaataaatgaagtat 14177985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 31996504 - 31996560
Alignment:
Q  215 ggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtatat 271  Q
    |||||| ||| |||| ||||||||  |||| ||||||||||||||||| ||||||||    
T  31996504 ggtcaccattataagcaaaaatcaacatttcagattcattcaattaataatgtatat 31996560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 269
Target Start/End: Complemental strand, 24750 - 24687
Alignment:
Q  206 acactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||| ||| |||||||||| |||| |||||| | ||||||||||||||||| | ||||||||||    
T  24750 acaccctccggtcactattataagcaaaaattaatattttagattcattcattaaatgatgtat 24687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 269
Target Start/End: Original strand, 61152 - 61222
Alignment:
Q  199 aacatatacactctctggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||| |||||| ||| |||||||| | |||| |||||||  | |||||||| |||||||||||||||||||    
T  61152 aacaaatacaccctccggtcactaatataagcaaaaatcccttttttagatacattcaattaatgatgtat 61222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 145973 - 146027
Alignment:
Q  215 ggtcactattttaagaaaaaatcattattttagattcattcaattaatgatgtat 269  Q
    |||||||||| |||  ||||||||| |||||||||||||||| | ||||||||||    
T  145973 ggtcactattataaacaaaaatcatcattttagattcattcattaaatgatgtat 146027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 271
Target Start/End: Complemental strand, 146077 - 146047
Alignment:
Q  241 attttagattcattcaattaatgatgtatat 271  Q
    |||||||||||||||||||||||||||||||    
T  146077 attttagattcattcaattaatgatgtatat 146047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 242 - 271
Target Start/End: Original strand, 14065 - 14094
Alignment:
Q  242 ttttagattcattcaattaatgatgtatat 271  Q
    ||||||||||||||||||||||||||||||    
T  14065 ttttagattcattcaattaatgatgtatat 14094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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