View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14927_high_1 (Length: 855)
Name: NF14927_high_1
Description: NF14927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14927_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 727; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 727; E-Value: 0
Query Start/End: Original strand, 11 - 839
Target Start/End: Original strand, 47501198 - 47502033
Alignment:
| Q |
11 |
caaaggggacaacgcatggcagttaacagcagcaacaatggttgggcttcaaagcattcccgggcttgtcatactttacggaagcctagtgaagaaaaca |
110 |
Q |
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| T |
47501198 |
caaaggggacaacgcatggcaattaacagcagcaacaatggttgggcttcaaagcattcccgggcttgtcatactttacggaagcctagtgaagaaaaca |
47501297 |
T |
|
| Q |
111 |
tgggctataaactcagctttcatggccttctatgcatttgcatccgttctcctttgttgggtttcatgggcataccaaatgtcatttggggagaaaatgg |
210 |
Q |
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| T |
47501298 |
tgggctataaactcagctttcatggccttctatgcatttgcatccgttctcctttgttgggtttcatgggcataccaaatgtcatttggggagaaaatgg |
47501397 |
T |
|
| Q |
211 |
tatttttcttagggaaaccaaatgtagcattagatgaaaagtttttgttggggaaagcatttttggggaattttcctaatgctacaatggtattttatca |
310 |
Q |
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| T |
47501398 |
tatttttcttagggaaaccaaatgtagcattagatgaaaagtttttgttggggaaagcatttttggggaattttcctaatgctacaatggtattttatca |
47501497 |
T |
|
| Q |
311 |
aggtgttttcgctggtcttactttgattttgatagctggtgctttacttgggagaatgaacattcgtgcatggatgttgtttgtgccactttgggttaca |
410 |
Q |
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| T |
47501498 |
aggtgttttcgctggtcttactttgattttgatagctggtgctttacttgggagaatgaacattcgtgcatggatgttgtttgtgccactttgggttaca |
47501597 |
T |
|
| Q |
411 |
ttctcgtacactgttgttgcctttagtatttggtgtcctgatggttggttggctaaacgtggggttattgattttgctgggggatatgttattcacctct |
510 |
Q |
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| T |
47501598 |
ttctcgtacactgttgttgcctttagtatttggtgtcctgatggttggttggctaaacgtggggttattgattttgctgggggatatgttattcacctct |
47501697 |
T |
|
| Q |
511 |
ctgctggtgttgctggttttactgctgcttattgggtgcgtgcgtgtattatcttcatatatatttgcttgttttttcaatgtcatctaatttgagacct |
610 |
Q |
| |
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| T |
47501698 |
ctgctggtgttgctggttttactgctgcttattgg----gtgcgtgtattatcttcatatatatttgcttgttttttcaatgtcatctaatttgagacct |
47501793 |
T |
|
| Q |
611 |
tattgcccaataaaagtacactatgaaataaatatctcagcgggaactaattaaattatttaaatttgggttgttggatcaagattgagtgacccgtatt |
710 |
Q |
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| T |
47501794 |
tattgcccaataaaagtacaatatgaaataaatatctcagcgagaac----taaattatttaaatttgggttgttggatcaagattgagtgacccgtatt |
47501889 |
T |
|
| Q |
711 |
tcaaaccgagtagtgttatatataaaag--------ttta-------tgatctacatcatttcaactaatttgacctaaaagtttatgaagttcgtccac |
795 |
Q |
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|||||||||||||||||||||||| || |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
47501890 |
tcaaaccgagtagtgttatatatagcaggacacttatttactaatattgatctacataatttcaactaatttgacctaaaagtttatgaagttcgtccac |
47501989 |
T |
|
| Q |
796 |
ccagatccaaaccctagtaaaaagaagaaaatactactaatatt |
839 |
Q |
| |
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| T |
47501990 |
ccagatccaaaccctagtaaaaagaagaaaatactgctaatatt |
47502033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 477 - 547
Target Start/End: Complemental strand, 25670994 - 25670924
Alignment:
| Q |
477 |
attgattttgctgggggatatgttattcacctctctgctggtgttgctggttttactgctgcttattgggt |
547 |
Q |
| |
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||||||| | |||| || ||||||||||| || ||| |||| |||||||||| ||||||||||||||||| |
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| T |
25670994 |
attgattattctggtggttatgttattcatctttcttctggaattgctggtttcactgctgcttattgggt |
25670924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 282 - 443
Target Start/End: Complemental strand, 13350111 - 13349950
Alignment:
| Q |
282 |
tttcctaatgctacaatggtattttatcaaggtgttttcgctggtcttactttgattttgatagctggtgctttacttgggagaatgaacattcgtgcat |
381 |
Q |
| |
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||||| |||||||| ||| | | || |||| ||||||| |||| | |||||||||||||||||||||||||| | | |||||||||||| | ||| | |
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| T |
13350111 |
tttccaaatgctactatgatttattttcaatgtgtttttgctgctattactttgattttgatagctggtgctgtgttggggagaatgaacttctatgctt |
13350012 |
T |
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| Q |
382 |
ggatgttgtttgtgccactttgggttacattctcgtacactgttgttgcctttagtatttgg |
443 |
Q |
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| T |
13350011 |
ggatgatgtttgtgcctttatggctcactttctcttacacttttactgcttttagtatttgg |
13349950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 181
Target Start/End: Original strand, 31605709 - 31605872
Alignment:
| Q |
18 |
gacaacgcatggcagttaacagcagcaacaatggttgggcttcaaagcattcccgggcttgtcatactttacggaagcctagtgaagaaaacatgggcta |
117 |
Q |
| |
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||||| |||||||| |||||||||||||| | || || ||||||| |||| |||||||| ||||| || || ||| | || ||||||| |||||| |
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| T |
31605709 |
gacaatgcatggcaactaacagcagcaacattagtaggccttcaaactgttcctgggcttgtaatactctatggcagcatggttaagaaaaaatgggccg |
31605808 |
T |
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| Q |
118 |
taaactcagctttcatggccttctatgcatttgcatccgttctcctttgttgggtttcatgggc |
181 |
Q |
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|||| || |||||||||||| | ||||||||||| | || || |||||||||||| |||||| |
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| T |
31605809 |
taaattcggctttcatggccctatatgcatttgctgctgtactagtttgttgggttttatgggc |
31605872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 477 - 547
Target Start/End: Original strand, 31606165 - 31606235
Alignment:
| Q |
477 |
attgattttgctgggggatatgttattcacctctctgctggtgttgctggttttactgctgcttattgggt |
547 |
Q |
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| T |
31606165 |
attgattatgccggggggtttgtaattcatctatcttctggtgttgcaggtttcactgctgcttattgggt |
31606235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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