View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14927_high_11 (Length: 417)
Name: NF14927_high_11
Description: NF14927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14927_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 14 - 347
Target Start/End: Complemental strand, 26946573 - 26946248
Alignment:
| Q |
14 |
cacctgcaactggactttggatatgtggaccgttgatgagtttaatcgatactgctgttattggtcagggaagttcaattgagcttgctgctttaggtat |
113 |
Q |
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| T |
26946573 |
cacctgcaactggactttggatatgtggaccgttgatgagtttaatcgatactgctgttattggtcagggaagttcaattgagcttgctgctttaggtat |
26946474 |
T |
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| Q |
114 |
tgatagtttagttactataattaaataatttgttgctttgaatctatgagattatgagattttgcattgtttatattaggatttgatttcataatgagaa |
213 |
Q |
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| T |
26946473 |
tgatagtttagttactataattaaataatttgttgctttgaatctatgagatt--------ttgcattgtttatattaggatttgatttcataatgagaa |
26946382 |
T |
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| Q |
214 |
attattgagttattgtgtttttaatttcgcttgtttaggtcctgctactgttgtttgtgattacatgagctatgtcttcatgtttctatcagttgctact |
313 |
Q |
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| T |
26946381 |
attattgagttattgtttttttaatttcgcttgtgcaggtcctgctactgttgtttgtgattacatgagctatgtcttcatgtttctatcagttgctact |
26946282 |
T |
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| Q |
314 |
tccaatatggttgctactgccctagctaaacagg |
347 |
Q |
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| T |
26946281 |
tccaatatggttgctactgccctagctaaacagg |
26946248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 26976011 - 26976110
Alignment:
| Q |
15 |
acctgcaactggactttggatatgtggaccgttgatgagtttaatcgatactgctgttattggtcagggaagttcaattgagcttgctgctttaggtatt |
114 |
Q |
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| T |
26976011 |
acctgctattggtctttggttatgtggaccgttgatgagtctcattgataccgctgttgttggtcaaggaagttcaattgaacttgctgctttaggtatt |
26976110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 15 - 114
Target Start/End: Complemental strand, 26991449 - 26991350
Alignment:
| Q |
15 |
acctgcaactggactttggatatgtggaccgttgatgagtttaatcgatactgctgttattggtcagggaagttcaattgagcttgctgctttaggtatt |
114 |
Q |
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| T |
26991449 |
acctgcaattggtctttggttatgcggaccgttgatgagtctcattgatactgctgttgttggtcaaggaagttcgattgaacttgctgctttaggtatt |
26991350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 15 - 114
Target Start/End: Complemental strand, 27005895 - 27005796
Alignment:
| Q |
15 |
acctgcaactggactttggatatgtggaccgttgatgagtttaatcgatactgctgttattggtcagggaagttcaattgagcttgctgctttaggtatt |
114 |
Q |
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| T |
27005895 |
acctgctattggtctttggttatgtggaccgttgatgagtctcattgatacagctgttgttggtcaaggaagttcaattgaacttgctgctttaggtatt |
27005796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 347
Target Start/End: Complemental strand, 26953945 - 26953848
Alignment:
| Q |
250 |
aggtcctgctactgttgtttgtgattacatgagctatgtcttcatgtttctatcagttgctacttccaatatggttgctactgccctagctaaacagg |
347 |
Q |
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| T |
26953945 |
aggtcctgccacggttgtttgtgattacatgaccttaacgttcatgtttctgtcagttgttacatccaatataattgctactgcccttgctaaacagg |
26953848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 347
Target Start/End: Complemental strand, 26991275 - 26991178
Alignment:
| Q |
250 |
aggtcctgctactgttgtttgtgattacatgagctatgtcttcatgtttctatcagttgctacttccaatatggttgctactgccctagctaaacagg |
347 |
Q |
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| T |
26991275 |
aggtcctgctactgttttttgtgattatttgggctactcttttatgtttctgtcgattgctacttcgaatatggttgctactgcccttgctaaacagg |
26991178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 26954325 - 26954273
Alignment:
| Q |
61 |
gatactgctgttattggtcagggaagttcaattgagcttgctgctttaggtat |
113 |
Q |
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| T |
26954325 |
gatactgctgttgttggtcagggaagttcaaccgagcttgctgctttaggtat |
26954273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 347
Target Start/End: Original strand, 26976184 - 26976281
Alignment:
| Q |
250 |
aggtcctgctactgttgtttgtgattacatgagctatgtcttcatgtttctatcagttgctacttccaatatggttgctactgccctagctaaacagg |
347 |
Q |
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| T |
26976184 |
aggtcctgctactgttttttgcgattatttgggctacttgtttatgtttttgtcgattgctacttcgaatatggttgctactgcacttgctaaacagg |
26976281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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