View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14927_high_15 (Length: 350)
Name: NF14927_high_15
Description: NF14927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14927_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 11 - 196
Target Start/End: Original strand, 408616 - 408801
Alignment:
| Q |
11 |
cacagatgtgtgatcagattaagagggccagcaaattttgggaaatttggatgaaaaccagtgtcacacttgccttcatcttgtaacttcttaatgatac |
110 |
Q |
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| T |
408616 |
cacagatgtgtgatcagattaagagggccagcaaattttgggaaatttggatgaaaaccagtgtcacacttgccttcatcttgtaacttcttaatgatac |
408715 |
T |
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| Q |
111 |
tttataactttttatgtaatagacgtaaattttcccaaactctttgtaactttttgaagagttgaaactttagggatagtttcaaa |
196 |
Q |
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| T |
408716 |
tttataactttttatgtaatagacgtaaattttctcaaactctttgtaactttttgaagagttgaaactttagggatagtttcaaa |
408801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 198 - 284
Target Start/End: Original strand, 412871 - 412959
Alignment:
| Q |
198 |
ctaaatttaagatgtttgtatacaaacccttgttctataatgttctgtatctatct--agctttttatctgttttctttacatgtatgt |
284 |
Q |
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| T |
412871 |
ctaaatttaagatgtttgtatacaaacccttgttctataatgttctgtatctatctaaagctttttatctgttttctttacatgtatgt |
412959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 295 - 333
Target Start/End: Original strand, 412982 - 413020
Alignment:
| Q |
295 |
ttaaaagcttctttcttattctctttaatgatagggagg |
333 |
Q |
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| T |
412982 |
ttaaaagcttctttcttattctctttaatgatagggagg |
413020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 295 - 331
Target Start/End: Complemental strand, 11655833 - 11655797
Alignment:
| Q |
295 |
ttaaaagcttctttcttattctctttaatgataggga |
331 |
Q |
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| T |
11655833 |
ttaaaagcttctttcttattctctttaatgataggga |
11655797 |
T |
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