View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14927_high_20 (Length: 318)

Name: NF14927_high_20
Description: NF14927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14927_high_20
NF14927_high_20
[»] chr5 (7 HSPs)
chr5 (19-306)||(1601512-1601799)
chr5 (124-306)||(8533955-8534151)
chr5 (128-306)||(8545524-8545720)
chr5 (148-306)||(8527388-8527560)
chr5 (205-283)||(9001906-9001984)
chr5 (146-185)||(8677043-8677082)
chr5 (241-283)||(8640109-8640151)
[»] chr7 (1 HSPs)
chr7 (124-306)||(48363144-48363342)
[»] chr1 (2 HSPs)
chr1 (124-266)||(26325082-26325229)
chr1 (243-284)||(5129472-5129513)
[»] chr4 (2 HSPs)
chr4 (184-306)||(9441772-9441894)
chr4 (148-185)||(9441722-9441759)


Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 306
Target Start/End: Complemental strand, 1601799 - 1601512
Alignment:
Q  19 cattccaaatcatttgccacaccttttgactatagatcctatgaaccggaaatatagatagaaatagccatcatagcaccaaacggattgatttaggaca 118  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1601799 cattcgaaatcatttgccacaccttttgactatagatcctatgaaccggaaatatagatagaaatagccatcatagcaccaaaaggattgatttaggaca 1601700  T
Q  119 atgagaaagtgaatgtgacaaatggatgtaaagggttcaatatcatgccaccaaaattgaaattcaaatctaaactattcagcaaagctcctcaaactga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1601699 atgagaaagtgaatgtgacaaatggatgtaaagggttcaatatcatgcccccaaaattgaaattcaaatctaaactattcagcaaagctcctcaaactga 1601600  T
Q  219 taattcattataattaacgcttagggattcagaaacccttttcaaggagcagttaaagactaagaatcaaggaaatcaggattgatga 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1601599 taattcattataattaacgcttagggattcagaaacccttttcaaggagcagttaaagactaagaatcaaggaaatcaggattgatga 1601512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 124 - 306
Target Start/End: Original strand, 8533955 - 8534151
Alignment:
Q  124 aaagtgaatgtgacaaatggatgtaaagggttcaatatcatgccaccaaaattgaaattcaa--------------atctaaactattcagcaaagctcc 209  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||              |||||| | ||||| ||||||| |    
T  8533955 aaagtgaacgtgacaaaaggatgtaaagggttcaatatcatgccaccaaaattgaaattcaatcattaaattttaaatctaatcaattcatcaaagctac 8534054  T
Q  210 tcaaactgataattcattataattaacgcttagggattcagaaacccttttcaaggagcagttaaagactaagaatcaaggaaatcaggattgatga 306  Q
    |||||  ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||  |||||||||    
T  8534055 tcaaatagataattcattataattcaggcttagggattcagaaacccttttcaaggagcagttaatgactaggaatctaggaaatccagattgatga 8534151  T

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Target: chr5; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 128 - 306
Target Start/End: Complemental strand, 8545720 - 8545524
Alignment:
Q  128 tgaatgtgacaaatggatgtaaagggttcaatat---catgccaccaaaattgaaattc---------------aaatctaaactattcagcaaagctcc 209  Q
    ||||||||||||| ||||||||||| ||||||||   ||||||||||||||||||||||               |||||||||||||||| |||||||||    
T  8545720 tgaatgtgacaaaaggatgtaaaggattcaatattatcatgccaccaaaattgaaattcaatcattaaaaatttaaatctaaactattcatcaaagctcc 8545621  T
Q  210 tcaaactgataattcattataattaacgcttagggattcagaaacccttttcaaggagcagttaaagactaagaatcaaggaaatcaggattgatga 306  Q
    |||||   |||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  8545620 tcaaatcaataattcattataattaacgctcagggatgcagaaactcttttcaaggagcagttaaagacgaagaataaaggaaatcaggattgatga 8545524  T

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Target: chr5; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 148 - 306
Target Start/End: Original strand, 8527388 - 8527560
Alignment:
Q  148 aaagggttcaatatcatgccaccaaaattgaaattcaa--------------atctaaactattcagcaaagctcctcaaactgataattcattataatt 233  Q
    ||||||||||||||||||||||||||||||||||||||              |||||| | ||||| | ||||| ||||||  |||||||||||||||||    
T  8527388 aaagggttcaatatcatgccaccaaaattgaaattcaatcattaaattttaaatctaatcgattcatcgaagctactcaaatagataattcattataatt 8527487  T
Q  234 aacgcttagggattcagaaacccttttcaaggagcagttaaagactaagaatcaaggaaatcaggattgatga 306  Q
     | | |||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||  |||||||||    
T  8527488 caggtttagggattcagaaacccttttcaaggagcagttaatgactaggaatctaggaaatccagattgatga 8527560  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 205 - 283
Target Start/End: Original strand, 9001906 - 9001984
Alignment:
Q  205 gctcctcaaactgataattcattataattaacgcttagggattcagaaacccttttcaaggagcagttaaagactaaga 283  Q
    |||||||||| ||||  |||||| || || || |||||||||||| |||| |||||||| |||||||||||||||||||    
T  9001906 gctcctcaaattgatcgttcattgtatttcacccttagggattcaaaaacacttttcaacgagcagttaaagactaaga 9001984  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 8677043 - 8677082
Alignment:
Q  146 gtaaagggttcaatatcatgccaccaaaattgaaattcaa 185  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  8677043 gtaaagggttcaatatcatgccaaaaaaattgaaattcaa 8677082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 283
Target Start/End: Original strand, 8640109 - 8640151
Alignment:
Q  241 agggattcagaaacccttttcaaggagcagttaaagactaaga 283  Q
    ||||||||||| ||| |||||||||||||||||||||| ||||    
T  8640109 agggattcagagacctttttcaaggagcagttaaagaccaaga 8640151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 124 - 306
Target Start/End: Complemental strand, 48363342 - 48363144
Alignment:
Q  124 aaagtgaatgtgacaaatggatgtaaa-gggttcaatatcatgccaccaaaattgaaattcaa---------------atctaaactattcagcaaagct 207  Q
    |||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||               |||||||||||||| |||||||    
T  48363342 aaagtgaacgtgacaaaaggatgtaaaagggttcaatatcatgccaccaaaattgaaattcaatcattaaaaatttaaatctaaactattcatcaaagct 48363243  T
Q  208 cctcaaactgataattcattataattaacgcttagggattcagaaacccttttcaaggagcagttaaagactaagaatcaaggaaatcaggattgatga 306  Q
    ||||||| |||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  48363242 cctcaaattgataactcattatgattaacgtttagggattcagaaacccttttcaaggagcagttaaagattaagaatcaaggaaagcaggattgatga 48363144  T

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Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 124 - 266
Target Start/End: Complemental strand, 26325229 - 26325082
Alignment:
Q  124 aaagtgaatgtgacaaatggatgtaaagggttcaatatcatgccaccaaaattgaaattcaa-----atctaaactattcagcaaagctcctcaaactga 218  Q
    ||||||||  ||||| | ||||||||||||||||||| ||||||||||||||||||||||||     |||||| | ||||| | ||||| ||||||  ||    
T  26325229 aaagtgaacatgacagaaggatgtaaagggttcaataccatgccaccaaaattgaaattcaatttaaatctaatcaattcatcgaagctactcaaataga 26325130  T
Q  219 taattcattataattaacgcttagggattcagaaacccttttcaagga 266  Q
    ||| ||||||||||| | ||||||||||||||||||||||||||||||    
T  26325129 taaatcattataattcaggcttagggattcagaaacccttttcaagga 26325082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 5129472 - 5129513
Alignment:
Q  243 ggattcagaaacccttttcaaggagcagttaaagactaagaa 284  Q
    ||||||| |||| ||||||||||||||| |||||||||||||    
T  5129472 ggattcaaaaacgcttttcaaggagcagataaagactaagaa 5129513  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 184 - 306
Target Start/End: Original strand, 9441772 - 9441894
Alignment:
Q  184 aaatctaaactattcagcaaagctcctcaaactgataattcattataattaacgcttagggattcagaaacccttttcaaggagcagttaaagactaaga 283  Q
    |||||||| | ||||| | ||||| ||||||  ||||||||||||||||| | | |||||||||||||||||||||||||||||||||||| ||||| ||    
T  9441772 aaatctaatcgattcatcgaagctactcaaatagataattcattataattcaggtttagggattcagaaacccttttcaaggagcagttaatgactagga 9441871  T
Q  284 atcaaggaaatcaggattgatga 306  Q
    ||| ||||||||  |||||||||    
T  9441872 atctaggaaatccagattgatga 9441894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 9441722 - 9441759
Alignment:
Q  148 aaagggttcaatatcatgccaccaaaattgaaattcaa 185  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  9441722 aaagggttcaatatcatgccaccaaaatttaaattcaa 9441759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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