View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14927_high_21 (Length: 313)
Name: NF14927_high_21
Description: NF14927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14927_high_21 |
 | |
|
| [»] scaffold0755 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 1557145 - 1557443
Alignment:
| Q |
1 |
ttgtgatacggtgtaagtctttatactttatctctcaggaccggttttaactcgttggactttgttttcagtctgttgtcatattttaatgcttccaaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1557145 |
ttgtgatacggtgtaagtctttatactttatctctcaggaccggttttaactcgttggactttgttttcagtctgttgtcatattttaatgctgccaaat |
1557244 |
T |
|
| Q |
101 |
cacaacatcataaggtgctgcaaggatcccatgataaattgaaaacaaacagagaccgcacctggtttgattctgctaagcaaaaacgtcaaatcattgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1557245 |
cacaacatcataaggtgctgcaaggatcccatgataacttgaaaacaaacagagaccgcacctggtttgattctgctaagcaaaaacgtcaaatcattgt |
1557344 |
T |
|
| Q |
201 |
ttccagtctccactcgatcgtcatctcagccttgattctatccgtcaactttgtcggtatctcccnnnnnnnattttacattgtttcggttcttctgtg |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
1557345 |
ttccagtctccactcgatcgtcatctcagccttgattctatctgtcgactttgtcggtatgcccctttttttattttacattgtttcggttcttctgtg |
1557443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 159 - 257
Target Start/End: Original strand, 17687156 - 17687254
Alignment:
| Q |
159 |
cacctggtttgattctgctaagcaaaaacgtcaaatcattgtttccagtctccactcgatcgtcatctcagccttgattctatccgtcaactttgtcgg |
257 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||| || ||||||| ||||| |||||||| |||||||||||||||||||||| || |||||||||| |
|
|
| T |
17687156 |
cacccggtttgattctgctaagccaaaacgtcaaaacagtgtttccggtctctactcgatcatcatctcagccttgattctatcagttgactttgtcgg |
17687254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0755 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0755
Description:
Target: scaffold0755; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 125
Target Start/End: Original strand, 3721 - 3785
Alignment:
| Q |
61 |
tttgttttcagtctgttgtcatattttaatgcttccaaatcacaacatcataaggtgctgcaagg |
125 |
Q |
| |
|
|||||||||||||||| |||||||||| |||| ||||||| || ||||||||||| ||||||| |
|
|
| T |
3721 |
tttgttttcagtctgtcgtcatattttgctgctgccaaatctcatgatcataaggtgttgcaagg |
3785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 44546552 - 44546605
Alignment:
| Q |
206 |
gtctccactcgatcgtcatctcagccttgattctatccgtcaactttgtcggta |
259 |
Q |
| |
|
|||||||||| | ||| ||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
44546552 |
gtctccactccaatgtcgtctcagccttggttctatccgtcaactttgttggta |
44546605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University