View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14927_high_27 (Length: 285)
Name: NF14927_high_27
Description: NF14927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14927_high_27 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 19 - 266
Target Start/End: Complemental strand, 28308486 - 28308222
Alignment:
| Q |
19 |
atgacaaatatcaacctcattaaaatttacnnnnnnngttttgtttattctatcagccatataatgtggaatttaaatccaagtcatgtgaaatgtgatc |
118 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28308486 |
atgacaaatatcaatctcattaaaatttacaaaaaaagttttgtttattctatcagccatataatgtggaatttaaatccaagtcatgtgaaatgtgatc |
28308387 |
T |
|
| Q |
119 |
ggaggaaattaaaataacactttcgtgacttggcctttactgaaatgtgatcaatctagaaaataacatgtgaaatat----------caatctaga--- |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||| |
|
|
| T |
28308386 |
ggaggaaattaaaataacactttcgtgacttggcctttactgaaatgtgatcaatctagaaaataacatgtgaaatatcagtagaggccaagcgagacta |
28308287 |
T |
|
| Q |
206 |
----aaataaacatattcttgaattgtaagagcaaggagtcgtgtatggaagaacatctagaaaa |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
28308286 |
tgactaataaacatattcttgaattgtaagagcaaggactcgtgtatggaagaacatctagaaaa |
28308222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University