View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14927_high_28 (Length: 280)
Name: NF14927_high_28
Description: NF14927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14927_high_28 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 15 - 280
Target Start/End: Complemental strand, 2028893 - 2028628
Alignment:
| Q |
15 |
tttttaactacagagataggagaaaataagtttcaaagttaacttattataccatatcctctcatcaaacactaaattgagatgcgatatgatacgatta |
114 |
Q |
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| T |
2028893 |
tttttaactacagagataggagaaaataagtttcaaagttaacttattataccatatcctctcatcaaacactaaattgagatgcgatatgatacgatta |
2028794 |
T |
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| Q |
115 |
tcctatcttatctcttaattatcttgcacaccaacacatcctttatattttgtataagttggtcaatatatacggatatcagaggcactacttacacgtc |
214 |
Q |
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| T |
2028793 |
tcctatcttatctcttaattatcttgcacagcaacacatcctttatattttgtataagttggtcaatatatacggatatcagaggcactacttacacgtc |
2028694 |
T |
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| Q |
215 |
gactaaaacaataattttaaaaagtaatataaaaaatattgaacacatctttaatctaaagtgtcg |
280 |
Q |
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| T |
2028693 |
gactcaaacaataattttaaaaagtaatataaaaaatattgaacacatctttaatctaaagtgtcg |
2028628 |
T |
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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 280
Target Start/End: Original strand, 1950276 - 1950374
Alignment:
| Q |
183 |
tatacggatatcagaggcactacttacacgtcgactaaaacaataattttaaa-aagtaatataaaaaatattgaacacatctttaatctaaagtgtcg |
280 |
Q |
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| T |
1950276 |
tataaggacatcagaggcgctaccaaaacgtcgacacaagtaataatttaaaacaagtaataaaaataatattgaatacgtctttaatctaaagtgtcg |
1950374 |
T |
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