View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14927_high_4 (Length: 516)
Name: NF14927_high_4
Description: NF14927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14927_high_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 16 - 516
Target Start/End: Original strand, 30194981 - 30195485
Alignment:
| Q |
16 |
aatgtcacatattttaacaagagtgatcctaaatactgcaaacaggtttt--tatttatatgaatggcaagaaagcagacatgtcctattttaaataagc |
113 |
Q |
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| T |
30194981 |
aatgtcacatattttaacaagagtgatcctaaatactacaaacaggtttttttatttatatgaatggcaagaaagcagacatgtcctattttaaataagc |
30195080 |
T |
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| Q |
114 |
aaaacatggttactaatgtctttggtgggaaaccggtggtaaaatgagccaatcaaatttatctgtaactatcatcattcactgtttcataaaaatcaac |
213 |
Q |
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| T |
30195081 |
aaaacatggttactaatgtctttggtgggaaaccggtggtaaaatgagccaatcaaatttatctgtaactatcatcattcactgtttcataaaaatcaac |
30195180 |
T |
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| Q |
214 |
atattccttttaataaaatgatttttcactcaacaactcatcactgacagcatagcaatttagtgaaaaaataagggatgtttggaacatgtgagcttga |
313 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
30195181 |
atattccttttaataaaaggatttttcactcaacaactcatcactgacagcatagcaatttagtgaaaagataagggatgtttggaaaatgtgagcttga |
30195280 |
T |
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| Q |
314 |
aagnnnnnnnnnctatcctaaattcactaatatactgtgatatcagtaatatgttctcaacaaaaagaagaaa----actgatgcctcaatatctgactt |
409 |
Q |
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|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
30195281 |
aa---aaaaaaactatcctaaattcactaatatactgttatatcagtaatatgttctcaacaaaaagaagaaaactgactgatgcttcaatatctgactt |
30195377 |
T |
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| Q |
410 |
gatattcttccatat-ttgttgactgtcgttttagcttttcatgtcattgatgtgttctctctatcctggaaccaaagtctaggtaaatctacaggagga |
508 |
Q |
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| T |
30195378 |
gatattcttccatatattgttgactgtcgttttagcttttcatgtcattgatgtgttctctctatcctggaaccaaagtctaggtaaatctacaggagga |
30195477 |
T |
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| Q |
509 |
aatttctc |
516 |
Q |
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| T |
30195478 |
aatttctc |
30195485 |
T |
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