View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14927_high_42 (Length: 218)
Name: NF14927_high_42
Description: NF14927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14927_high_42 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 1e-98; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 31717847 - 31717662
Alignment:
| Q |
20 |
atttgaacacttcgtcccaaataggataccagttgtccgtctctactcttgttttcttcttaacacaatcagctcccactcgaacaatacaaatctgtca |
119 |
Q |
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| T |
31717847 |
atttgaacacttcgtcccaaataggataccagttgtccgtctctactcttgttttcttcttaacacaatcagctcccactccaacaatacaaatctgtca |
31717748 |
T |
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| Q |
120 |
cgcagttttatataatataatcaaactataagataaatgtacatgatcagccaaacgaatttagaaaatgatggacaagaattatc |
205 |
Q |
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| T |
31717747 |
cgcagttttatataatataatcaaactataagataaatgtacatgatcagccaaacgaatttagaaaatgatggacaagaattatc |
31717662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 31654268 - 31654168
Alignment:
| Q |
19 |
aatttgaacacttcgtcccaaataggataccagttgtccgtctctactcttgttttcttcttaacacaatcagctcccactcgaacaatacaaatctgtc |
118 |
Q |
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| T |
31654268 |
aattcgaactcttcgtcccaaacaggataccaattgtccatctttacacttgttttcatcttcacactatcagctcccactccagcaatacaaacctgtc |
31654169 |
T |
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| Q |
119 |
a |
119 |
Q |
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| T |
31654168 |
a |
31654168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 31704626 - 31704522
Alignment:
| Q |
29 |
cttcgtcccaaataggataccagttgtccgtctctactcttgttttcttcttaacacaatcagctcccactcgaacaatacaaatctgtcacgcagtttt |
128 |
Q |
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| T |
31704626 |
cttcgtcccaaatgggattccaattgtccatctttacacttgttttcttcttggcacaatcagctctcactccagcaatagaaacctgtcacatagtttt |
31704527 |
T |
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| Q |
129 |
atata |
133 |
Q |
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|||| |
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| T |
31704526 |
gtata |
31704522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 67 - 204
Target Start/End: Original strand, 44901426 - 44901563
Alignment:
| Q |
67 |
cttgttttcttcttaacacaatcagctcccactcgaacaatacaaatctgtcacgcagttttatataatataatcaaactataagat-aaatgtacatga |
165 |
Q |
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|||||||||||||| |||| ||||||||||||| ||||||||||| ||||||| || ||||||| ||| | ||||||||||||||| ||||||||| || |
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| T |
44901426 |
cttgttttcttctt--cacagtcagctcccactccaacaatacaaacctgtcacacaattttatacaatttgatcaaactataagataaaatgtacagga |
44901523 |
T |
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| Q |
166 |
tcagccaaacgaatttagaaaatg-atggacaagaattat |
204 |
Q |
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| T |
44901524 |
tcagccaaatagatttagaaaatgtgtggacaagaattat |
44901563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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