View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14927_high_5 (Length: 502)
Name: NF14927_high_5
Description: NF14927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14927_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 138; Significance: 6e-72; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 13 - 157
Target Start/End: Original strand, 13746482 - 13746627
Alignment:
| Q |
13 |
aaaataaattcatcaacccctaaattgaacatcacaaaaggagatgtcatgttgtagagtgataaaaatcaaagaaaaatattgacggggttcaataaaa |
112 |
Q |
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| T |
13746482 |
aaaataaattcatcaacccctaaattgaacatcacaaaaggagatgtcatgttgtagagtgataaaaatcaaagaaaaatattgacggggttcaataaaa |
13746581 |
T |
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| Q |
113 |
atttgtccattttat-aagataggaaacaacttttaaattttagat |
157 |
Q |
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| T |
13746582 |
atttgtccattttataaagataggaaacaacttttaaattttagat |
13746627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 140 - 271
Target Start/End: Original strand, 13746642 - 13746775
Alignment:
| Q |
140 |
aacttttaaattttagatgaatggaaatcaaagaaaatttttattgggatcaaagccaaaattcattcatttcatagggaccacaaacatatttagcttt |
239 |
Q |
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||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
13746642 |
aacttttaaattttagatgaatgtaaatcaaagaaattttttattggaatcaaagccaaaattcattcatttcatagggaccacaaacatatttagattt |
13746741 |
T |
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| Q |
240 |
at--tatatatactagaatagtagaatttggata |
271 |
Q |
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| T |
13746742 |
attatatatatactagaatagtagaatttggata |
13746775 |
T |
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