View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14927_low_11 (Length: 461)
Name: NF14927_low_11
Description: NF14927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14927_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 29822467 - 29822716
Alignment:
| Q |
1 |
acgatgattgtggatgaaacatggaggtggtgttgggagagtgaggaacaaagtgttagagttagcagaagtagaaccaaacgttgccaatgccatggtt |
100 |
Q |
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| T |
29822467 |
acgatgattgtggatgaaacatggaggtggtgttgggagagtgaggaacaaagtgttagagttagcagaagtagaaccaaacgttgctaatgccatggtt |
29822566 |
T |
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| Q |
101 |
tggttccaaagtgaatgtttcagtagtttgccatgtgcaagg-aaggtgaaactcaactaactgatcatcctgaggtcacatatctatctcc---nnnnn |
196 |
Q |
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| T |
29822567 |
tggttccagagtgaatgtttcagtagtttgccatgtgcaaggaaaggtgaaactcaactaactgatcatcctgaggtcacatatctatctcctttttttt |
29822666 |
T |
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| Q |
197 |
nnnnggatgattatggtattgccacgctttaccccccaactacattccat |
246 |
Q |
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| T |
29822667 |
ttttggatgattatggtattgccacgctttatcccccacctacattccat |
29822716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 380 - 445
Target Start/End: Original strand, 29822920 - 29822986
Alignment:
| Q |
380 |
gacctctacct-ttttaatgatatagaacttatgtggcacaattgagttcattaaaatcgacttcat |
445 |
Q |
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| T |
29822920 |
gacctctacctcttttaatgatatagaatttatgtggcacaattgagttcattaaaatcgacttcat |
29822986 |
T |
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