View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14927_low_12 (Length: 440)
Name: NF14927_low_12
Description: NF14927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14927_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 121; Significance: 8e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 251 - 433
Target Start/End: Complemental strand, 5518044 - 5517864
Alignment:
| Q |
251 |
acaagagaagtttatgagttggttacaacaaaaataacttcatttcagaagttatcaaagactagaattttaagatcagaagaaacttgcaacggaaatt |
350 |
Q |
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| T |
5518044 |
acaagagaagtttatgagttggttacaacaaaaataagttcatttcagaagttagcaaagactagaatttgaagatcagaagaaacttgcaacggaagtt |
5517945 |
T |
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| Q |
351 |
tttaagtag--ttaagaagacatgtttcattcatacaaaacctaaagataattagtttcttttctttttctataaatagtataat |
433 |
Q |
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| T |
5517944 |
tttaagtagctataagaagacatgtttcattcatacaaaatctaaag----ttagattcttctctttttctataaatagtctaat |
5517864 |
T |
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Target: chr7; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 5519071 - 5518897
Alignment:
| Q |
19 |
gccactcaaagattacaggaacagcagatttaagatagaataaacagtcaattgaagatactctaacagnnnnnnnttgtcactatttttagtcttgtaa |
118 |
Q |
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| T |
5519071 |
gccactcaaagattacaggaacggaagatttaagatagaataaatagtcaattgatgatactctaatagaaaaaagt-gtcactatttttagtcttgtaa |
5518973 |
T |
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| Q |
119 |
agaatgttgcaccaatttaatttcttccatatacataatcatttc----atattaagcaaaacaaatggtatgcaa |
190 |
Q |
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| T |
5518972 |
agaatgttgcaccaatttaatttcttccatatacataatcgtttcatatatattaagtgaaacaaatggtatgcaa |
5518897 |
T |
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