View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14927_low_13 (Length: 434)
Name: NF14927_low_13
Description: NF14927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14927_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 4e-85; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 7823226 - 7823063
Alignment:
| Q |
1 |
ggtggaagaaacctgaatgataagggttggtgcttggtagaaaacagaatcagatgaaatcagagcaagtaaaagcaagcagagactttgttctaaagtt |
100 |
Q |
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| T |
7823226 |
ggtggaagaaacctgaatgataagggttggtgcttggtagaaaacagaatcagatgaaatcagagcaagtaaaagcaagcagagactttgttctaaagtt |
7823127 |
T |
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| Q |
101 |
cacgtgggttggtatcattataactcccacaactgctgctctgatagcaacgtccatacacaac |
164 |
Q |
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| T |
7823126 |
cacgtgggttggtatcattataactcccacaactgctgctctgattgcaacgtccatacacaac |
7823063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 303 - 419
Target Start/End: Complemental strand, 7822924 - 7822808
Alignment:
| Q |
303 |
cacttgataaaaaatgacaaagtaattatannnnnnnagtggtgaaaagatgccataaatagcagtcaatacaaataatgaaagagatagtacgaagaaa |
402 |
Q |
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| T |
7822924 |
cacttgataaaaaatgacatggtaattatatttttttagtggtgaaaagatgccataaatagtagtcgatacaaataatgaaagagatagtacgaagaaa |
7822825 |
T |
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| Q |
403 |
ttttgaaaattcaatat |
419 |
Q |
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| T |
7822824 |
ttttgaaaattcaatat |
7822808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 259
Target Start/End: Complemental strand, 7822998 - 7822968
Alignment:
| Q |
229 |
cagctaggcatggaatgaacttcaaaaatca |
259 |
Q |
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| T |
7822998 |
cagctaggcatggaatgaacttcaaaaatca |
7822968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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