View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14927_low_15 (Length: 405)
Name: NF14927_low_15
Description: NF14927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14927_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 10 - 299
Target Start/End: Original strand, 5673812 - 5674102
Alignment:
| Q |
10 |
aacaaaggactgggagttcataaaattcgtgaatttaatttgtcattgttagataaatggtgttagaggatgtttatggatcaaggaagtctgtggtata |
109 |
Q |
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| T |
5673812 |
aacaaaggactgggagttcataaaattcgggaatttaatttgtcattgttagataaatggtgttagaggatgtttttggatcaaggaagtctgtggtata |
5673911 |
T |
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| Q |
110 |
agatgttagtagctaggtatggaagaaaggtggttatattaggtaggtggtcggttacgatcattgtggggggaagcaaatgatggctattcctcgagta |
209 |
Q |
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| T |
5673912 |
agatatcagtagctaggtatggaagaaaggtggttatattaggtaggtggtcggttacgatcattgtggggggaagcaaatgatggctatccctcgagta |
5674011 |
T |
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| Q |
210 |
taaaggtcggg-tttgggtatttggtttgatgacaacttggtgcgggatgtgcgataggtctaaaacattctatttgttcaattcttggat |
299 |
Q |
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| T |
5674012 |
gaaaggtcgggttttgggtatttggtttgatgacaacttagtgcaggatgtgcgacaggtctaaaacattctattagttcaattcttggat |
5674102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 10 - 299
Target Start/End: Original strand, 5698864 - 5699154
Alignment:
| Q |
10 |
aacaaaggactgggagttcataaaattcgtgaatttaatttgtcattgttagataaatggtgttagaggatgtttatggatcaaggaagtctgtggtata |
109 |
Q |
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| T |
5698864 |
aacaaaggactgggagttcataaaattcgggaatttaatttgtcattgttagataaatggtgttagaggatgtttttggatcaaggaagtctgtggtata |
5698963 |
T |
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| Q |
110 |
agatgttagtagctaggtatggaagaaaggtggttatattaggtaggtggtcggttacgatcattgtggggggaagcaaatgatggctattcctcgagta |
209 |
Q |
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| T |
5698964 |
agatatcagtagctaggtatggaagaaaggtggttatattaggtaggtggtcggttacgatcattgtggggggaagcaaatgatggctatccctcgagta |
5699063 |
T |
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| Q |
210 |
taaaggtcggg-tttgggtatttggtttgatgacaacttggtgcgggatgtgcgataggtctaaaacattctatttgttcaattcttggat |
299 |
Q |
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| T |
5699064 |
gaaaggtcgggttttgggtatttggtttgatgacaacttagtgcaggatgtgcgacaggtctaaaacattctattagttcaattcttggat |
5699154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 44958 - 45014
Alignment:
| Q |
25 |
gttcataaaattcgtgaatttaatttgtcattgttagataaatggtgttagaggatg |
81 |
Q |
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| T |
44958 |
gttcatagaatttgagaatttaatttaacattgttaggtaagtggtgttagaggatg |
45014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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