View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14927_low_17 (Length: 379)
Name: NF14927_low_17
Description: NF14927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14927_low_17 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 379
Target Start/End: Complemental strand, 2272515 - 2272154
Alignment:
| Q |
18 |
ggatttgtgtgaatccttgagcaaaactttctgatggatcatgaatcatgatctgtaaaatagccaaaccagagaagtctcaattccaatcctttctgat |
117 |
Q |
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| T |
2272515 |
ggatttgtgtgaatccttgagcaaaactttctgatggatcatgaatcatgatctgtaaaatagccaaaccagagaagtctcaattccaatcctttctgat |
2272416 |
T |
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| Q |
118 |
tattcacttgacaatacatattaaatgcacaagaagactcaaaccattacaagaaccatatcccaatgtagtacaatttgataaactacaagcatagtca |
217 |
Q |
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| T |
2272415 |
tattcacttgacaatacatattaaatgcacaagaagactcaaaccattacaagaaccatatcccaatgtagtacaatttgataaactacaagcatagtca |
2272316 |
T |
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| Q |
218 |
acagcaccagccaaatcaggatgcaaaatacaccactgtatttgaaaacagttgacataaatacaatgttagtgttataactgtgagaatttaagaagca |
317 |
Q |
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| T |
2272315 |
acagcaccagccaaatcaggatgcaaaatacaccactgtatttgaaaacagttgacataaatacaatgttagtgttataactgtgagaatttaagaagca |
2272216 |
T |
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| Q |
318 |
tatatagtctacatttttcgccaaatcagtacaaataaacatagtaataacaacctcctaat |
379 |
Q |
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| T |
2272215 |
tatatagtctacatttttagccaaatcagtacaaagaaacatagtaataacaacctcctaat |
2272154 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 77 - 233
Target Start/End: Complemental strand, 46353947 - 46353776
Alignment:
| Q |
77 |
atagccaaaccagagaagtctcaattccaatcctttctgattattcacttgacaatacatattaaatgcacaag-------------aagactcaaacca |
163 |
Q |
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| T |
46353947 |
atagccaaacctgaaaaatcacaatcccaatcctt-ctgattatgcacttgataatacatattaaatgcataagaagcattcccttcaagactcaaacca |
46353849 |
T |
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| Q |
164 |
ttacaagaa---ccatatcccaatgtagtacaatttgataaactacaagcatagtcaacagcaccagccaaat |
233 |
Q |
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| T |
46353848 |
ttacaagaagatccatatcctaatgcagtacaatctgataagctacatgcataatcaatactaccagccaaat |
46353776 |
T |
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