View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14927_low_18 (Length: 368)
Name: NF14927_low_18
Description: NF14927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14927_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 48407945 - 48408304
Alignment:
| Q |
1 |
tactcatgaatcatacaatctgctacttttaattcagctagggaaaacatactttcatggtgtggattgatatggtgtccaccaaaaattcaattattac |
100 |
Q |
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| T |
48407945 |
tactcatgaatcatacaatctgctacttttaattcagctagggaaaacataccttcatggtgtggaatgatatggtgtccaccaaaaattcaattatcac |
48408044 |
T |
|
| Q |
101 |
tcaaaactgggatagatttaccatcacccacgctccaccgacttccggcttttaagatgaattttgatttataaatgcttctccaaacaaaactatgatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||| |
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| T |
48408045 |
tcaaaactgggatagatttaccatcacccacgctccaccgacttccggcttttaagatgaattttgatttacaaatgcttctccaaacaaaattagaatt |
48408144 |
T |
|
| Q |
201 |
atgttcaaaatttgaatcgagaaaattacacctcagatagtatctagctttatacattcttacgtcaagagttacacttctggagaccaaaaccatggtc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48408145 |
atgttcaaaatttgaatcgagaaaattacacctcagatagtatctagctttatacattcttacgtcaagagttacacttctggagaccaaaaccatggtc |
48408244 |
T |
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| Q |
301 |
tatccagcctttcaataaaacaa----tagtttcaaatttatgaatataatgcggaccta |
356 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
48408245 |
tatccagcctttcaataaaacaaggagtagtttcaaatttatgaatataatgcggaccta |
48408304 |
T |
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