View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14927_low_2 (Length: 780)
Name: NF14927_low_2
Description: NF14927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14927_low_2 |
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| [»] chr4 (8 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 498; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 242 - 780
Target Start/End: Original strand, 56259392 - 56259930
Alignment:
| Q |
242 |
attaactttgggttggattgcattatactctaaaatatcagaggataaatatatttattactttatacatcggtgatcagacattataatagttggcatt |
341 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56259392 |
attaactttgggttggattgcattatactctagaatatcagaggataaatatatttattactttatacatcggtgatcagacattataatagttggcatt |
56259491 |
T |
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| Q |
342 |
gctagccaatatctttgggctactggatccttttgaaaggatttatttattccttttattaatttttagacgaccaaactccaatgattagcaacatacc |
441 |
Q |
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|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56259492 |
gctagccaatatttttgggctactggacccttttgaaaggatttatttattccttttattaatttttagacgaccaaactccaatgattagcaacatacc |
56259591 |
T |
|
| Q |
442 |
atgaaaacttcatctccagtagcatatctcccagcgtgttcttttaatagcttttcaagtgctgaaacacattcaattttacatacattatatattagat |
541 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56259592 |
atgaaaacttcatctccagtagcatatttcccagcgtgttcttttaatagcttttcaagtgctgaaacacattcaattttacatacattatatattagat |
56259691 |
T |
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| Q |
542 |
taatccaacaatacactgaaacttgtatctagtaaggagggacataacataaacagaatacttttaaccagtaaagaagagtatataaggtttgggttgg |
641 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56259692 |
taatccaacaatacactgaaacttgtatctagtaaggagggacataacataaacagaatacttttaaccagtaaagaagagtatataaggtttgggttgg |
56259791 |
T |
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| Q |
642 |
ggtaggggagttaagaagtggagttacaaggaggtcaatgatttgatnnnnnnnacctccaaagcagtaataccaactatagcagcatttgttattaaaa |
741 |
Q |
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| T |
56259792 |
ggtaggggagttaagaagtggagttacaaggaggtcaatgatttgatcccccccacccccaaagcagtaataccaactatagcagcatttgttattaaaa |
56259891 |
T |
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| Q |
742 |
aagaggagcgagccgaggacaaaacaccacagtgaatat |
780 |
Q |
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| T |
56259892 |
aagaggagcgagccgaggacaaaacaccacagtgaatat |
56259930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 56259140 - 56259363
Alignment:
| Q |
19 |
cacagaaatacgagccatacatttcattacaaccccgcataaaatatacatgagaccatagaatactaccatgtcaatgttgaatctcttagaagcagca |
118 |
Q |
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| T |
56259140 |
cacagaaatacaagccatacatttcattacaaccccgcataaaatatacatgagaccatagaatactaccatgtcaatgttgaatctcttagaagcagca |
56259239 |
T |
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| Q |
119 |
tctaactgaggggctaaaaatatatccgcctgcaaattataatgaacatgatagattatacataattaagccacaaatatattcctaaaaacatgcaaat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56259240 |
tctaactgaggggctaaaaatatatccgcctgcaaattataatgaacatgatagattatacataattaagccacaaatatattcctaaaaacatgcaaat |
56259339 |
T |
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| Q |
219 |
gtgcttgttcgttccaacagctaa |
242 |
Q |
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| T |
56259340 |
gtgcttgttcgttcctacagctaa |
56259363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 55 - 218
Target Start/End: Complemental strand, 56255919 - 56255756
Alignment:
| Q |
55 |
gcataaaatatacatgagaccatagaatactaccatgtcaatgttgaatctcttagaagcagcatctaactgaggggctaaaaatatatccgcctgcaaa |
154 |
Q |
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|||||||||||||| ||||||||||||||||||||| |||||||| ||| ||||||| ||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
56255919 |
gcataaaatatacacgagaccatagaatactaccatttcaatgttaaatttcttagatgcagcatgtaactgaggtgctaaaaatatatccgcctgcaaa |
56255820 |
T |
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| Q |
155 |
ttataatgaacatgatagattatacataattaagccacaaatatattcctaaaaacatgcaaat |
218 |
Q |
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| T |
56255819 |
tgataatgaacatgttagattatacataactcagccgacaatatattccacaaaagatgcaaat |
56255756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 418 - 579
Target Start/End: Complemental strand, 56267412 - 56267253
Alignment:
| Q |
418 |
aactccaatgattagcaacataccatgaaaacttcatctccagtagcatatctcccagcgtgttcttttaatagcttttcaagtgctgaaacacattcaa |
517 |
Q |
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||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||| |||||||||||||| |||||||||||||||| |
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| T |
56267412 |
aactccaatcattagcaacataccatgaaaacttcgtctccagtagcatacctcccagtgtgttctttcaatagcttttcaagggctgaaacacattcaa |
56267313 |
T |
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| Q |
518 |
ttttacatacattatatattagattaatccaacaatacactgaaacttgtatctagtaagga |
579 |
Q |
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|| || | | || | ||||||| || ||| ||| ||||||||||| |||||||||||||| |
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| T |
56267312 |
ttataaaaatat--tggattagataaagccagcaacacactgaaactcgtatctagtaagga |
56267253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 425 - 560
Target Start/End: Complemental strand, 56255530 - 56255396
Alignment:
| Q |
425 |
atgattagcaacataccatgaaaacttcatctccagtagcatatctcccagcgtgttcttttaatagcttttcaagtgctgaaacacattcaattttaca |
524 |
Q |
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|||||||||||||||||||||||||||| || || |||||||| ||||||| ||||||||| |||||||||||||||||||||| | ||||||| || | |
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| T |
56255530 |
atgattagcaacataccatgaaaacttcgtcaccggtagcatacctcccag-gtgttctttcaatagcttttcaagtgctgaaaaatgttcaattgtaaa |
56255432 |
T |
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| Q |
525 |
tacattatatattagattaatccaacaatacactga |
560 |
Q |
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| T |
56255431 |
tacattatagattatattaagccaacaacacactga |
56255396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 70 - 183
Target Start/End: Complemental strand, 35536612 - 35536499
Alignment:
| Q |
70 |
gagaccatagaatactaccatgtcaatgttgaatctcttagaagcagcatctaactgaggggctaaaaatatatccgcctgcaaattataatgaacatga |
169 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||| ||||||| ||||||||| ||||||||||||||||||| ||||| ||||||||| || |
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| T |
35536612 |
gagaccatagaatactaccatgtgaatgctgaatctcttagatgcagcatgtaactgaggtgctaaaaatatatccgcctacaaatgataatgaacgtgt |
35536513 |
T |
|
| Q |
170 |
tagattatacataa |
183 |
Q |
| |
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||| ||||| |||| |
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| T |
35536512 |
taggttatatataa |
35536499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 71 - 149
Target Start/End: Complemental strand, 56267768 - 56267690
Alignment:
| Q |
71 |
agaccatagaatactaccatgtcaatgttgaatctcttagaagcagcatctaactgaggggctaaaaatatatccgcct |
149 |
Q |
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| T |
56267768 |
agaccatagaatactaccatgtgaatgttgaatctcttagatgcagcatgtaactgaggtgctaaaaatatatccgcct |
56267690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 272 - 375
Target Start/End: Complemental strand, 56267525 - 56267422
Alignment:
| Q |
272 |
taaaatatcagaggataaatatatttattactttatacatcggtgatcagacattataatagttggcattgctagccaatatctttgggctactggatcc |
371 |
Q |
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|||||||||||| |||||||| ||||||||| | |||| || |||||||||||| |||||||| ||||||||||||| | |||||||||||||| || |
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| T |
56267525 |
taaaatatcagaagataaatacatttattacatgatacgtcagtgatcagacatatgaatagttgacattgctagccaaaaaatttgggctactggaccc |
56267426 |
T |
|
| Q |
372 |
tttt |
375 |
Q |
| |
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|||| |
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| T |
56267425 |
tttt |
56267422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 4e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 70 - 183
Target Start/End: Original strand, 27004631 - 27004744
Alignment:
| Q |
70 |
gagaccatagaatactaccatgtcaatgttgaatctcttagaagcagcatctaactgaggggctaaaaatatatccgcctgcaaattataatgaacatga |
169 |
Q |
| |
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||||||||||||||||||||||| |||| ||||||||||||| ||||||| ||||||||| ||||||||||||||||||| ||||| ||||||||| || |
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| T |
27004631 |
gagaccatagaatactaccatgtgaatgctgaatctcttagatgcagcatgtaactgaggtgctaaaaatatatccgcctacaaatgataatgaacgtgt |
27004730 |
T |
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| Q |
170 |
tagattatacataa |
183 |
Q |
| |
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||| ||||| |||| |
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| T |
27004731 |
taggttatatataa |
27004744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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