View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14927_low_21 (Length: 329)

Name: NF14927_low_21
Description: NF14927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14927_low_21
NF14927_low_21
[»] chr3 (1 HSPs)
chr3 (11-305)||(34894013-34894305)


Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 11 - 305
Target Start/End: Original strand, 34894013 - 34894305
Alignment:
Q  11 taatactgcaagagttgaaatattgtctggctataattggttattgctcaaattagcttcatgaatgatatgtaaggcaataactttcttaaaaggaaaa 110  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  34894013 taatactgcaagagttgaaatattgtctggctataaatggttattgctcaaattagcttcatgaatgat--gtaaggcaataactttcttaaaaggaaaa 34894110  T
Q  111 ttaaaatagacttctaactaacaaattagcatcatattgattgatcacaaaagccttaacttcaaaagcagtgagggagtaattgcaataatatatagtg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34894111 ttaaaatagacttctaactaacaaattagcatcatattgattgatcacaaaagccttaacttcaaaagcagtgagggagtaattgcaataatatatagtg 34894210  T
Q  211 tcccttcagctagcaagctacattatagttaactatttactccttccatctcataatatagtataacaacaaaaactatctcattttaaatatct 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34894211 tcccttcagctagcaagctacattatagttaactatttactcctttcatctcatattatagtataacaacaaaaactatctcattttaaatatct 34894305  T

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