View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14927_low_22 (Length: 325)
Name: NF14927_low_22
Description: NF14927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14927_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 140 - 309
Target Start/End: Complemental strand, 35034599 - 35034430
Alignment:
| Q |
140 |
gaatgccttaaatatatttgtgacttgagtccattgatgtgcttcagtgcacaatgtgtggttgtgtacttggtagaacaacattatgagagnnnnnnnc |
239 |
Q |
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| T |
35034599 |
gaatgccttaaatatatttgtgacttgagtccattgatgtgcttcagtgcacaatgtgtggttgtgtacttggtagaacaacattatgagagtttttttc |
35034500 |
T |
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| Q |
240 |
ttaaaagtttactagttgatgacacgttatgggggaaaaggcctgttaatctagtttaaaattttattac |
309 |
Q |
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| T |
35034499 |
ttaaaagtttactagttgatgacacgttatgggggaaaaggcctgttaatctaatttaaaattttattac |
35034430 |
T |
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Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 35034723 - 35034658
Alignment:
| Q |
16 |
atgaagctcgcttaagcgaagacttggaccaatgctgggaggtgcttgctgaaccaatccagacgg |
81 |
Q |
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| T |
35034723 |
atgaagctcgcttaagcgaagacttggaccaatgctgggaggtgcttgctgaaccaatccagacgg |
35034658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 140 - 308
Target Start/End: Original strand, 36854203 - 36854371
Alignment:
| Q |
140 |
gaatgccttaaatatatttgtgacttgagtccattgatgtgcttcagtgcacaatgtgtggttgtgtacttggtagaacaacattatgagagnnnnnnnc |
239 |
Q |
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| T |
36854203 |
gaatgccttaaatatatttgtgacttgagtccattgaagtgcttcagtgcacgatgtgtggctgtgtacttggtagaacaacattaggagagtttttttc |
36854302 |
T |
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| Q |
240 |
ttaaaagtttactagttgatgacacgttatgggggaaaaggcctgttaatctagtttaaaattttatta |
308 |
Q |
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| T |
36854303 |
ttaaaagtttactagctgatgacacattatgggggaaagggcttgttaatctagtttaaaattttatta |
36854371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 36854085 - 36854144
Alignment:
| Q |
22 |
ctcgcttaagcgaagacttggaccaatgctgggaggtgcttgctgaaccaatccagacgg |
81 |
Q |
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| T |
36854085 |
ctcgcttaagcgaagacttggaccagtgctgggaggtgcttgctgaaccaatccagacgg |
36854144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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