View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14927_low_24 (Length: 319)

Name: NF14927_low_24
Description: NF14927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14927_low_24
NF14927_low_24
[»] chr8 (9 HSPs)
chr8 (15-302)||(3017302-3017589)
chr8 (54-125)||(1527574-1527648)
chr8 (178-215)||(34338713-34338750)
chr8 (185-234)||(39560339-39560388)
chr8 (181-241)||(26819280-26819340)
chr8 (185-239)||(31188884-31188938)
chr8 (179-240)||(10744257-10744318)
chr8 (190-247)||(26762859-26762916)
chr8 (188-241)||(43059452-43059505)
[»] chr6 (4 HSPs)
chr6 (15-302)||(18361129-18361419)
chr6 (186-247)||(25094709-25094770)
chr6 (190-235)||(31650307-31650352)
chr6 (190-241)||(8782973-8783022)
[»] chr1 (3 HSPs)
chr1 (189-241)||(14303943-14303995)
chr1 (202-247)||(15867621-15867666)
chr1 (186-234)||(32102333-32102381)
[»] chr7 (3 HSPs)
chr7 (184-241)||(5376306-5376363)
chr7 (181-241)||(35169971-35170031)
chr7 (188-235)||(18577512-18577560)
[»] chr2 (1 HSPs)
chr2 (185-234)||(5262448-5262497)
[»] chr5 (2 HSPs)
chr5 (178-221)||(7705348-7705391)
chr5 (199-235)||(16230791-16230827)
[»] chr4 (3 HSPs)
chr4 (204-234)||(17123220-17123250)
chr4 (202-247)||(18966011-18966056)
chr4 (190-238)||(37848421-37848469)
[»] chr3 (1 HSPs)
chr3 (185-234)||(38900006-38900055)


Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 15 - 302
Target Start/End: Original strand, 3017302 - 3017589
Alignment:
Q  15 cagagacaacttaaagaaattggtaccaaataagtacttaaaggaagtaactcagtcaatcaaggaaaatcattggcatgttcctatccctcaaatcata 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3017302 cagagacaacttaaagaaattggtaccaaataagtacttaaaggaagtaactcagtcaatcaaggaaaatcattggcatgttcctatccctccaatcata 3017401  T
Q  115 catggtaaaagaattagtttcacaaaggttaactttgagttacttaatgaatttagacagtcgacaaatcatgtgtgactttcaaagtagttatgattaa 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |   ||||||||||||||||||||||||||||||||||||    
T  3017402 catggtaaaagaattagtttcacaaaggttaactttgagttacttaacgaatttagacaatgatcaaatcatgtgtgactttcaaagtagttatgattaa 3017501  T
Q  215 agtcaaacttttttaatgatctgacgactatgaatgactgtctgtnnnnnnnctctacactgattgtaattttatgtcaataagcctt 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  3017502 agtcaaacttttttaatgatctgacgactatgaatgactgtctgtaaaaaaactctacactgattgtaattttatgtcaataagcctt 3017589  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 125
Target Start/End: Original strand, 1527574 - 1527648
Alignment:
Q  54 aaaggaagtaactcagtcaatcaaggaaaatcattggcatgt---tcctatccctcaaatcatacatggtaaaag 125  Q
    ||||||| |||||||   |||||||||||| |||||||||||   ||||||||||||||||||| ||||||||||    
T  1527574 aaaggaaataactcatgaaatcaaggaaaaccattggcatgttcctcctatccctcaaatcatatatggtaaaag 1527648  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 34338713 - 34338750
Alignment:
Q  178 acaaatcatgtgtgactttcaaagtagttatgattaaa 215  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  34338713 acaaatcatgtgtgactttaaaagtagttatgattaaa 34338750  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 39560339 - 39560388
Alignment:
Q  185 atgtgtgactttcaaagtagttatgattaaagtcaaacttttttaatgat 234  Q
    |||| |||||||  |||||||||||||||||||||||| |||||||||||    
T  39560339 atgtatgactttagaagtagttatgattaaagtcaaacatttttaatgat 39560388  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 26819340 - 26819280
Alignment:
Q  181 aatcatgtgtgactttcaaagtagttatgattaaagtcaaacttttttaatgatctgacga 241  Q
    ||||||||||||||||  ||||||||  ||| |||||||||| ||||||||||||| ||||    
T  26819340 aatcatgtgtgactttagaagtagttgcgataaaagtcaaacatttttaatgatctaacga 26819280  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 31188938 - 31188884
Alignment:
Q  185 atgtgtgactttcaaagtagttatgattaaagtcaaacttttttaatgatctgac 239  Q
    ||||||||||||| ||||| |||||||| |||| |||| ||| ||||||||||||    
T  31188938 atgtgtgactttcgaagtaattatgattgaagttaaacatttgtaatgatctgac 31188884  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 10744318 - 10744257
Alignment:
Q  179 caaatcatgtgtgactttcaaagtagttatgattaaagtcaaacttttttaatgatctgacg 240  Q
    |||||||  |||||||||  ||| |||||| ||||||||||||| ||||||||||| |||||    
T  10744318 caaatcacatgtgactttagaagcagttataattaaagtcaaacgtttttaatgatgtgacg 10744257  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 26762916 - 26762859
Alignment:
Q  190 tgactttcaaagtagttatgattaaagtcaaacttttttaatgatctgacgactatga 247  Q
    |||||||  ||||| |||||||||||||||||| |||||| |||||||| || |||||    
T  26762916 tgactttagaagtaattatgattaaagtcaaacgtttttactgatctgaggattatga 26762859  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 43059505 - 43059452
Alignment:
Q  188 tgtgactttcaaagtagttatgattaaagtcaaacttttttaatgatctgacga 241  Q
    |||||||||  |||||||||| |||||||||||| |||||| ||||| ||||||    
T  43059505 tgtgactttagaagtagttattattaaagtcaaagttttttgatgatttgacga 43059452  T

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Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 302
Target Start/End: Original strand, 18361129 - 18361419
Alignment:
Q  15 cagagacaacttaaagaaattggtaccaaataagtacttaaaggaagtaactcagtcaatcaaggaaaatcattggcatgttcctatccctcaaatcata 114  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||| |||| |||| |||||||    
T  18361129 cagagacaacttaaagaaattggtaccaaataagtacttaaagaaagtaactcggtcaatcaaggaaaaccattggcatgtttctattcctcgaatcata 18361228  T
Q  115 catggtaaaagaattagtttcacaaaggttaactttgagttacttaatgaatttagacagtcgacaaatcatgtgtgactttcaaagtagttatgattaa 214  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  18361229 catggtaaaagaattagtttcacaaaggttaactttgatatacttaaagaatttagacagtgaacaaatcatgtgtgactttcaaagtagttatgattaa 18361328  T
Q  215 agtcaaacttttttaatgatctgacgactatgaatgactgtctgt---nnnnnnnctctacactgattgtaattttatgtcaataagcctt 302  Q
    ||| |||| |||||||||||||||||||||||||||||||| |||          || ||||||||||||||||| |||||||||||||||    
T  18361329 agttaaacgtttttaatgatctgacgactatgaatgactgtatgtgtaaaaatatctttacactgattgtaatttaatgtcaataagcctt 18361419  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 25094709 - 25094770
Alignment:
Q  186 tgtgtgactttcaaagtagttatgattaaagtcaaacttttttaatgatctgacgactatga 247  Q
    ||||||||||| |||||| |||||||||||||||||| | |||||||||  ||||| |||||    
T  25094709 tgtgtgactttaaaagtacttatgattaaagtcaaacatgtttaatgattagacgattatga 25094770  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 31650352 - 31650307
Alignment:
Q  190 tgactttcaaagtagttatgattaaagtcaaacttttttaatgatc 235  Q
    |||||||  |||||||||||||||||||||||| ||||||||||||    
T  31650352 tgactttagaagtagttatgattaaagtcaaacatttttaatgatc 31650307  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 8783022 - 8782973
Alignment:
Q  190 tgactttcaaagtagttatgattaaagtcaaacttttttaatgatctgacga 241  Q
    |||||||  |||||||||||||||||||||||  |||||||||||| |||||    
T  8783022 tgacttttgaagtagttatgattaaagtcaaa--tttttaatgatcggacga 8782973  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 14303995 - 14303943
Alignment:
Q  189 gtgactttcaaagtagttatgattaaagtcaaacttttttaatgatctgacga 241  Q
    |||||||| ||||||||||||||||||||||||||||| ||| ||||||||||    
T  14303995 gtgactttaaaagtagttatgattaaagtcaaacttttataacgatctgacga 14303943  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 15867621 - 15867666
Alignment:
Q  202 tagttatgattaaagtcaaacttttttaatgatctgacgactatga 247  Q
    |||||||||||||||||||||  |||||||||| |||||| |||||    
T  15867621 tagttatgattaaagtcaaacagttttaatgatatgacgattatga 15867666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 32102381 - 32102333
Alignment:
Q  186 tgtgtgactttcaaagtagttatgattaaagtcaaacttttttaatgat 234  Q
    ||||||| ||| ||| || |||||||||||||||||| |||||||||||    
T  32102381 tgtgtgattttaaaattatttatgattaaagtcaaacatttttaatgat 32102333  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 5376363 - 5376306
Alignment:
Q  184 catgtgtgactttcaaagtagttatgattaaagtcaaacttttttaatgatctgacga 241  Q
    |||||| ||||||  ||||||||||||||| |||||||| ||||||||||||||||||    
T  5376363 catgtgcgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacga 5376306  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 35170031 - 35169971
Alignment:
Q  181 aatcatgtgtgactttcaaagtagttatgattaaagtcaaacttttttaatgatctgacga 241  Q
    ||||||||||||||||  |||||||||||||||||||||||| | |||||| |||| ||||    
T  35170031 aatcatgtgtgactttagaagtagttatgattaaagtcaaacatctttaataatctaacga 35169971  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 18577512 - 18577560
Alignment:
Q  188 tgtgactttcaaagtagttatgattaaagtcaaac-ttttttaatgatc 235  Q
    |||||||||| ||||||||||| |||||||||||| |||||||||||||    
T  18577512 tgtgactttcgaagtagttatgtttaaagtcaaacattttttaatgatc 18577560  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 5262448 - 5262497
Alignment:
Q  185 atgtgtgactttcaaagtagttatgattaaagtcaaacttttttaatgat 234  Q
    |||||||| |||| ||||||||||||| ||||||||||||||| ||||||    
T  5262448 atgtgtgagtttcgaagtagttatgatcaaagtcaaactttttaaatgat 5262497  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 178 - 221
Target Start/End: Complemental strand, 7705391 - 7705348
Alignment:
Q  178 acaaatcatgtgtgactttcaaagtagttatgattaaagtcaaa 221  Q
    ||||||||||||||||||| ||||| |||||||| |||||||||    
T  7705391 acaaatcatgtgtgactttaaaagtggttatgataaaagtcaaa 7705348  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 16230791 - 16230827
Alignment:
Q  199 aagtagttatgattaaagtcaaacttttttaatgatc 235  Q
    |||||||||||||||||||||||| |||| |||||||    
T  16230791 aagtagttatgattaaagtcaaacattttaaatgatc 16230827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 234
Target Start/End: Original strand, 17123220 - 17123250
Alignment:
Q  204 gttatgattaaagtcaaacttttttaatgat 234  Q
    |||||||||||||||||||||||||||||||    
T  17123220 gttatgattaaagtcaaacttttttaatgat 17123250  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 18966011 - 18966056
Alignment:
Q  202 tagttatgattaaagtcaaacttttttaatgatctgacgactatga 247  Q
    |||||| |||||||||||||| ||||||||||| |||||| |||||    
T  18966011 tagttacgattaaagtcaaacatttttaatgatatgacgattatga 18966056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 37848421 - 37848469
Alignment:
Q  190 tgactttcaaagtagttatgattaaagtcaaacttttttaatgatctga 238  Q
    ||||||| |||||||||| |||||||||||||  |||||| ||||||||    
T  37848421 tgactttaaaagtagttacgattaaagtcaaatgtttttagtgatctga 37848469  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 38900055 - 38900006
Alignment:
Q  185 atgtgtgactttcaaagtagttatgattaaagtcaaacttttttaatgat 234  Q
    |||||||||||| |||||||||| |||  ||||||||| |||||||||||    
T  38900055 atgtgtgactttaaaagtagttaggatacaagtcaaacgtttttaatgat 38900006  T

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