View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14927_low_28 (Length: 307)
Name: NF14927_low_28
Description: NF14927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14927_low_28 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 39483526 - 39483833
Alignment:
| Q |
1 |
ttatgttgatatttgtgaagtatgaagagattttgagtcctttttatagcatggatagtagcatttggtgtcttgactaaaatgtggaaagtgacttgaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39483526 |
ttatgttgatatttgtgaagtatgaagagatttagagtcctttttatagcatggatagtagcatttggtgtcttgactaaaatgtggaaagtgacttgaa |
39483625 |
T |
|
| Q |
101 |
ttgaaatatgtgatatttttaatatatattcaaaataaaatttcaaaacaaacgtgggtatgtgattttttctaacgaaggaaacaactagggaggttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39483626 |
ttgaaatatgtgatatttttaatatatattcaaaataaaatttcaaaacaaacgtgggtatgtgattttttctaacgaaggaaacaactagggaggttct |
39483725 |
T |
|
| Q |
201 |
gatttctaaaaacc-aatttggattatagttttggagagaagtgtatacaagagtagagagttattcattaaagagcaaaaacaca--ggaaaattgaag |
297 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
39483726 |
gatttctaaaaaccaaatttggattatagttttggagagaagtgtatacaagagt--agagttattcattaaagagcaaaaacacattggaaaattgaag |
39483823 |
T |
|
| Q |
298 |
aattacgggt |
307 |
Q |
| |
|
|||||||||| |
|
|
| T |
39483824 |
aattacgggt |
39483833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University