View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14927_low_32 (Length: 285)

Name: NF14927_low_32
Description: NF14927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14927_low_32
NF14927_low_32
[»] chr8 (9 HSPs)
chr8 (1-278)||(2028350-2028627)
chr8 (70-278)||(1950435-1950646)
chr8 (72-274)||(10767529-10767731)
chr8 (73-230)||(2046366-2046526)
chr8 (73-230)||(2036989-2037149)
chr8 (68-218)||(2050187-2050337)
chr8 (68-218)||(2054193-2054346)
chr8 (68-179)||(2032985-2033099)
chr8 (88-199)||(2057169-2057280)
[»] chr4 (1 HSPs)
chr4 (68-162)||(48908694-48908788)
[»] chr2 (4 HSPs)
chr2 (94-188)||(28786134-28786228)
chr2 (134-182)||(28713345-28713393)
chr2 (134-179)||(28736619-28736664)
chr2 (134-179)||(28743245-28743290)


Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 2028627 - 2028350
Alignment:
Q  1 tttgtaccaatgaaaataactaaagttcaaggagcattgagcacataaattgtatatgtatgcatacaaacatacctgcatacaacaggaaaatcttgtg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||    
T  2028627 tttgtaccaatgaaaataactaaagttcaaggagcattgagcacataaattgtatatgcatgcatacaaacatacctgcatacaacaggaaaatcttctg 2028528  T
Q  101 gtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctggtgagctatacaaatcaaaattgcttttgtaaataaatgatcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2028527 gtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctggtgagctatacaaatcaaaattgcttttgtaaataaatgatcc 2028428  T
Q  201 atgcatatctcttgtataaaactcctttttagcatctgtttccatctcatgaaacctcttcacaccatccttcatctc 278  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2028427 atgcaaatctcttgtataaaactcctttttagcatctgtctccatctcatgaaacctcttcacaccatccttcatctc 2028350  T

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Target: chr8; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 70 - 278
Target Start/End: Original strand, 1950435 - 1950646
Alignment:
Q  70 acatacctgcatacaacaggaaaatcttgtggtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctggtgagctataca 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  1950435 acatacctgcatacaacaggaaaatcttgtggtttgggagtatcaggagccaagtaacaagcacaagtatccctccaattgagtgctggtgagctataca 1950534  T
Q  170 aatcaaaattgcttttgtaaataaatgatccatgcatatctcttgtataaa---actcctttttagcatctgtttccatctcatgaaacctcttcacacc 266  Q
    |||||||||||||||||||||||||||||  ||   ||||| |||| ||||   ||||||||||||||||||| ||||||||||||||||||||||||||    
T  1950535 aatcaaaattgcttttgtaaataaatgatttatttctatcttttgtgtaaaagtactcctttttagcatctgtatccatctcatgaaacctcttcacacc 1950634  T
Q  267 atccttcatctc 278  Q
    ||||||||||||    
T  1950635 atccttcatctc 1950646  T

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Target: chr8; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 72 - 274
Target Start/End: Complemental strand, 10767731 - 10767529
Alignment:
Q  72 atacctgcatacaacaggaaaatcttgtggtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctggtgagctatacaaa 171  Q
    |||||||||||| ||||||| ||||| ||||||||||||||||||||||||| |||| ||| |||||||||||||||| ||||||||||||||||| | |    
T  10767731 atacctgcatactacaggaatatcttctggtttgggagtatcaggagccaagtaacatgtaaaagtatccctccaattaagtgctggtgagctataaata 10767632  T
Q  172 tcaaaattgcttttgtaaataaatgatccatgcatatctcttgtataaaactcctttttagcatctgtttccatctcatgaaacctcttcacaccatcct 271  Q
    ||||| || || ||||||||||| |||  |||  ||||||||||||| || || |||||  | ||||| |||  ||||| ||||||||| |||||||| |    
T  10767631 tcaaagttactattgtaaataaaggatttatgtctatctcttgtatacaaatcttttttgacttctgtatcctgctcataaaacctcttaacaccatctt 10767532  T
Q  272 tca 274  Q
    |||    
T  10767531 tca 10767529  T

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Target: chr8; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 73 - 230
Target Start/End: Complemental strand, 2046526 - 2046366
Alignment:
Q  73 tacctgcatacaacaggaaaatcttgtggtttgggagtatcagg---agccaaggaacaagtacaagtatccctccaattgagtgctggtgagctataca 169  Q
    ||||||||||| |||||||  |||| ||||||| ||||||||||   ||||||| |||||| | ||||||| ||||||||||||||||||| |||||| |    
T  2046526 tacctgcataccacaggaatctcttctggtttgagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaa 2046427  T
Q  170 aatcaaaattgcttttgtaaataaatgatccatgcatatctcttgtataaaactccttttt 230  Q
     |||| ||||||| ||||||||||| |||| || |||||||||||||||||| || |||||    
T  2046426 tatcataattgctattgtaaataaaagatctattcatatctcttgtataaaaatctttttt 2046366  T

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Target: chr8; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 73 - 230
Target Start/End: Complemental strand, 2037149 - 2036989
Alignment:
Q  73 tacctgcatacaacaggaaaatcttgtggtttgggagtatcagg---agccaaggaacaagtacaagtatccctccaattgagtgctggtgagctataca 169  Q
    ||||||||||| |||||||  |||| ||||||  ||||||||||   ||||||| |||||| | ||||||| ||||||||||||||||||| |||||| |    
T  2037149 tacctgcataccacaggaatctcttctggtttaagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaa 2037050  T
Q  170 aatcaaaattgcttttgtaaataaatgatccatgcatatctcttgtataaaactccttttt 230  Q
     |||| ||||||| ||||||||||| |||| || |||||||||||||||||| || |||||    
T  2037049 tatcataattgctattgtaaataaaagatctattcatatctcttgtataaaaatctttttt 2036989  T

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Target: chr8; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 2050337 - 2050187
Alignment:
Q  68 aaacatacctgcatacaacaggaaaatcttgtggtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctggtgagctata 167  Q
    ||||||||||||| ||  | |||||||||| ||||||||||||||||||||||||| |||| | | || ||||||||||||||||||| || ||||||||    
T  2050337 aaacatacctgcacactgcgggaaaatcttctggtttgggagtatcaggagccaagtaacacgcaaaactatccctccaattgagtgccggagagctata 2050238  T
Q  168 caaatcaaaattgcttttgtaaataaatgatccatgcatatctcttgtata 218  Q
     | ||||||||| || || |||| ||| |||| || |||||||||||||||    
T  2050237 aatatcaaaattactattataaacaaaggatctattcatatctcttgtata 2050187  T

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Target: chr8; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 2054346 - 2054193
Alignment:
Q  68 aaacatacctgcatacaacaggaaaatcttgtggtttgggagtatcagg---agccaaggaacaagtacaagtatccctccaattgagtgctggtgagct 164  Q
    |||||||||||||||| |||||||| |||| ||||||| ||||||||||   |||||||  ||||  | || ||||| |||||||||||||||| |||||    
T  2054346 aaacatacctgcataccacaggaaactcttctggtttgagagtatcaggtggagccaagttacaaccaaaactatccttccaattgagtgctggagagct 2054247  T
Q  165 atacaaatcaaaattgcttttgtaaataaatgatccatgcatatctcttgtata 218  Q
    ||| | ||||| |||||| ||||||||||| ||||  |||||||||||||||||    
T  2054246 ataaatatcaacattgctattgtaaataaaggatctctgcatatctcttgtata 2054193  T

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Target: chr8; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 68 - 179
Target Start/End: Complemental strand, 2033099 - 2032985
Alignment:
Q  68 aaacatacctgcatacaacaggaaaatcttgtggtttgggagtatcagg---agccaaggaacaagtacaagtatccctccaattgagtgctggtgagct 164  Q
    |||||||||||||||| |||||||| |||||||||||| ||||||||||   ||||||| ||||  || || ||||||||||||||||||||||||||||    
T  2033099 aaacatacctgcataccacaggaaactcttgtggtttgagagtatcaggtggagccaagtaacacataaaactatccctccaattgagtgctggtgagct 2033000  T
Q  165 atacaaatcaaaatt 179  Q
    ||| | |||||||||    
T  2032999 ataaatatcaaaatt 2032985  T

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Target: chr8; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 88 - 199
Target Start/End: Complemental strand, 2057280 - 2057169
Alignment:
Q  88 ggaaaatcttgtggtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctggtgagctatacaaatcaaaattgcttttgt 187  Q
    |||||||||| |||||| |||||||||||||||||| ||||| || || ||||||||||||||||||| || |||||||| | ||||| |||||| ||||    
T  2057280 ggaaaatcttctggttttggagtatcaggagccaagtaacaactaaaactatccctccaattgagtgccggagagctataaatatcaacattgctattgt 2057181  T
Q  188 aaataaatgatc 199  Q
    ||| ||| ||||    
T  2057180 aaacaaaggatc 2057169  T

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Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 68 - 162
Target Start/End: Original strand, 48908694 - 48908788
Alignment:
Q  68 aaacatacctgcatacaacaggaaaatcttgtggtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctggtgag 162  Q
    |||||||||||||||| | ||||||||||| ||||||||||||||||||||||||| ||||| || ||||||||||||||||||| |||||||||    
T  48908694 aaacatacctgcatactagaggaaaatcttctggtttgggagtatcaggagccaagaaacaaataaaagtatccctccaattgagcgctggtgag 48908788  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 188
Target Start/End: Original strand, 28786134 - 28786228
Alignment:
Q  94 tcttgtggtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctggtgagctatacaaatcaaaattgcttttgta 188  Q
    ||||||||||| |||| || |||||||||||||||   | |||||||||||||||||||||||| ||| ||||| | || ||||||||| |||||    
T  28786134 tcttgtggtttaggagcattaggagccaaggaacacacaaaagtatccctccaattgagtgctgatgaactataaagattaaaattgctattgta 28786228  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 28713345 - 28713393
Alignment:
Q  134 aagtatccctccaattgagtgctggtgagctatacaaatcaaaattgct 182  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  28713345 aagtatccctccaattaagtgctggtgatctatacaaatcaaaattgct 28713393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 28736619 - 28736664
Alignment:
Q  134 aagtatccctccaattgagtgctggtgagctatacaaatcaaaatt 179  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||    
T  28736619 aagtatccctccaattaagtgctggtgaactatacaaatcaaaatt 28736664  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 28743245 - 28743290
Alignment:
Q  134 aagtatccctccaattgagtgctggtgagctatacaaatcaaaatt 179  Q
    |||||||||||||||| || |||||||| |||||||||||||||||    
T  28743245 aagtatccctccaattaagcgctggtgaactatacaaatcaaaatt 28743290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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