View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14927_low_37 (Length: 268)
Name: NF14927_low_37
Description: NF14927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14927_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 262
Target Start/End: Original strand, 29198073 - 29198316
Alignment:
| Q |
19 |
attgatgttggtaccaagaactctaatagtgttgttattggtattcctgtttggtggaattaccctagcgttatttaaggatttgtannnnnnnacatta |
118 |
Q |
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| T |
29198073 |
attgatgttggtaccaagaactctaatagtgttgttattggtattcctgtttggtggaattaccctagcgttatttaaggatttgtatttttttacatta |
29198172 |
T |
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| Q |
119 |
tttcatttttctgtatgcttgtcaaagattgatgaagcaaattttaatgcacatatatactattgtgatgtatacctaaagtcataaatctcttaacctc |
218 |
Q |
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| T |
29198173 |
tttaatttttctgtatgcttgtcaaagattgatgaagcaaactttaatgcacatatatactattgtgatgtatacctaaagtcataaatctcttaacctc |
29198272 |
T |
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| Q |
219 |
cttttttggagtcataccaatactatggtactatttcatctctc |
262 |
Q |
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| T |
29198273 |
cttttttggagtcataccaatactgtggtactatttcatttctc |
29198316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 12271351 - 12271428
Alignment:
| Q |
19 |
attgatgttggtaccaagaactctaatagtgttgttattggtattcctgtttggtggaattaccctagcgttatttaa |
96 |
Q |
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| T |
12271351 |
attgatgttggtacgaagaactctaatggtgctgttattggtattcctgtttggtggaattaccctaacattatttaa |
12271428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 12288017 - 12288103
Alignment:
| Q |
19 |
attgatgttggtaccaagaactctaatagtgttgttattggtattcctgtttggtggaattaccctagcgttatttaaggatttgta |
105 |
Q |
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| T |
12288017 |
attgatgttggtaccaagaactctaatggaggtgttattggtattccttttaggtggaattaccccggcattgtttaaagatttgta |
12288103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 154
Target Start/End: Original strand, 12267449 - 12267577
Alignment:
| Q |
24 |
tgttggtaccaagaactctaatagtgttgttattggtattcctgtttggtggaattaccctagcgttatttaaggatttgtannnnnnnacattatttca |
123 |
Q |
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| T |
12267449 |
tgttggtgtcaagaactctaatggtgttgctattggttttcccttttgatggaattaccctaacattatttaa-gatttgta-ttttttacattatttca |
12267546 |
T |
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| Q |
124 |
tttttctgtatgcttgtcaaagattgatgaa |
154 |
Q |
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| T |
12267547 |
tttttttgcatgcttgttaaagattgatgaa |
12267577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 187
Target Start/End: Original strand, 12257353 - 12257512
Alignment:
| Q |
22 |
gatgttggtaccaagaactctaatagtgttgttattggtattcctgtttggtggaattaccctagcgttatttaaggatttgtannnnnnnacattattt |
121 |
Q |
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| T |
12257353 |
gatgttggtaccaaggactctaatggtgttgctattggtattccgttttggtggaattacccaaacattatttaaatatttata----tttatattattt |
12257448 |
T |
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| Q |
122 |
catttttctgtatgcttgtcaaagattgatgaagcaaattttaatgcacatatatactattgtgat |
187 |
Q |
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| T |
12257449 |
gattttt-tgcattcttgtcaaagattaatgaagtcaattttgatgcaca-atatattattgtgat |
12257512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 187
Target Start/End: Original strand, 12264745 - 12264904
Alignment:
| Q |
22 |
gatgttggtaccaagaactctaatagtgttgttattggtattcctgtttggtggaattaccctagcgttatttaaggatttgtannnnnnnacattattt |
121 |
Q |
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| T |
12264745 |
gatgttggtaccaaggactctaatggtgttgctattggtattccgttttggtggaattacccaaacattatttaaatatttata----tttatattattt |
12264840 |
T |
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| Q |
122 |
catttttctgtatgcttgtcaaagattgatgaagcaaattttaatgcacatatatactattgtgat |
187 |
Q |
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| T |
12264841 |
gattttt-tgcattcttgtcaaagattaatgaagtcaattttgatgcaca-atatattattgtgat |
12264904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 151
Target Start/End: Original strand, 12283170 - 12283297
Alignment:
| Q |
22 |
gatgttggtaccaagaactctaatagtgttgttattggtattcctgtttggtggaattaccctagcgttatttaaggatttgtannnnnnnacattattt |
121 |
Q |
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| T |
12283170 |
gatgttggtgtcaagaactgtaatggtgttgctattggttttcccttttggtggaattaccctaacattatttaa-gatttgta-ttttttacattattt |
12283267 |
T |
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| Q |
122 |
catttttctgtatgcttgtcaaagattgat |
151 |
Q |
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| T |
12283268 |
aatttttttgcatgcttgtcaaagattgat |
12283297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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