View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14927_low_38 (Length: 266)
Name: NF14927_low_38
Description: NF14927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14927_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 56259907 - 56260143
Alignment:
| Q |
14 |
aggacaaaacaccacagtgaatattttcttcaaccattaacattaaatgctactctggcaaaagatagtcaagacccgagtgttgaagctaacaaatgtt |
113 |
Q |
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| T |
56259907 |
aggacaaaacaccacagtgaatattttcttcaaccattaacattaaatgctactctggcaaaagatagtcaagacccgagtgttgaagctaacaaatgtt |
56260006 |
T |
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| Q |
114 |
ctttccaccagggatactaactatgcctttgaccaattttatgatccactttattttgttaggtaagttacattcattgtttttacttactagaggagct |
213 |
Q |
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| T |
56260007 |
ctttccaccagggatactaactatgcctttgaccaattttatgatccactttattttgttaagtaagttacattcattgtttttacttactagaggagct |
56260106 |
T |
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| Q |
214 |
tttgaagttctcctctgtaaacttggaagctcaaaag |
250 |
Q |
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| T |
56260107 |
tttgaagttctcctctgtaaacttggaagctcaaaag |
56260143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 56255206 - 56255162
Alignment:
| Q |
14 |
aggacaaaacaccacagtgaatattttcttcaaccattaacatta |
58 |
Q |
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| T |
56255206 |
aggacaaaataccacagtgaatattttcttcaaccattaacatta |
56255162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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