View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14927_low_4 (Length: 554)
Name: NF14927_low_4
Description: NF14927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14927_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 19 - 548
Target Start/End: Complemental strand, 51238034 - 51237508
Alignment:
| Q |
19 |
ggaagtgattgaatgtaagcacacatgttagtttcatgtcagactctcagtgccgtacaccagacaccttcaattcaaagtgttggtcccagtacacagc |
118 |
Q |
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| T |
51238034 |
ggaagtgattgaatgtaagcacacatgttagtttcatgtcagactctcagtgccgtacaccagacaccttcaattcaaagtgttggtcccagtacatagc |
51237935 |
T |
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| Q |
119 |
ttatcagacttaagttttaaatgcatgggacagaagtctgattgtagtaaacctactcatcatttgttcttttggtggcatttgaacattagaaaaattt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
51237934 |
ttatcagacttaagttttaaatgcatgggacagaagtctgattgtagtaaacctactcatcatttgttcttttggtggcatttgaacattaggagaattt |
51237835 |
T |
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| Q |
219 |
atggcttcaatttatgatatgttcaaatgacgcatttctgaacaattacgagttacagatttcattcacatgccttaaaagttactnnnnnnntacctga |
318 |
Q |
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| T |
51237834 |
atggcttcaatttatgatatgttcaaatgacgcatttctgaacaattacgagttacagatttcattcacatgccttaaaagttgct---aaaatacctga |
51237738 |
T |
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| Q |
319 |
tgggctctgtatgcaaaatgcacaccctgtagtagaagagaatcttgattagattctctgtctgaatttcgaatggattcaagctccattgtcaatcttt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51237737 |
tgggctctgtatgcaaaatgcacaccctgtagtagaagagaatcttgattagattctctgtctgaatttcgaatggattcaagctccattgtcaatcttt |
51237638 |
T |
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| Q |
419 |
tcatgtacatcttgacaagagtcattgaagactgctttatctgcagaaatggtgcatagctaatcaactcaattctaataagcatttcaaatgccaatag |
518 |
Q |
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| T |
51237637 |
tcatgtacatcttgacaagagtcattgaagactgctttatctgcagaaatggtgtatagctaatcaactcaattctaataagcatttcaaaggccaatag |
51237538 |
T |
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| Q |
519 |
gggtaatagagtcattgtttttcatctcac |
548 |
Q |
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| T |
51237537 |
gggtattagagtcattgtttttcatttcac |
51237508 |
T |
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