View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14927_low_41 (Length: 248)
Name: NF14927_low_41
Description: NF14927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14927_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 12 - 229
Target Start/End: Original strand, 40742376 - 40742593
Alignment:
| Q |
12 |
agataatactgctgctgctaacaatgtcagcaagtggactggcacagtttacatcttctctcttgttggtgctttccttagtgattcttattggggaaga |
111 |
Q |
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| T |
40742376 |
agataatgctgctgctgctaacaatgtcagcaagtggactggcacagtttacatcttctctcttgttggtgctttccttagtgattcttattggggaaga |
40742475 |
T |
|
| Q |
112 |
tacaaaacatgtgctatctttcaaggcatttttgtaaccgtaagtaatatacattcaattctatgaagcacgaatacgacatggacactgaatacgacac |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40742476 |
tacaaaacatgtgctatctttcaaggcatttttgtaaccgtaagtaatatacattcaattctatgaagcacgaatacgacatggacactggatacgacac |
40742575 |
T |
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| Q |
212 |
ggacactgaaacgccgac |
229 |
Q |
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||||| |||||||||||| |
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| T |
40742576 |
ggacattgaaacgccgac |
40742593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 31 - 158
Target Start/End: Complemental strand, 4709958 - 4709831
Alignment:
| Q |
31 |
aacaatgtcagcaagtggactggcacagtttacatcttctctcttgttggtgctttccttagtgattcttattggggaagatacaaaacatgtgctatct |
130 |
Q |
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| T |
4709958 |
aacaacgtgagcaaatggactggaactgtttacatcttctctctagtgggagctttcctaagtgactcttattggggaagatataaaacatgtgctgtct |
4709859 |
T |
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| Q |
131 |
ttcaaggcatttttgtaaccgtaagtaa |
158 |
Q |
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| T |
4709858 |
ttcaggtcatttttgtaattgtaagtaa |
4709831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 2743487 - 2743578
Alignment:
| Q |
24 |
tgctgctaacaatgtcagcaagtggactggcacagtttacatcttctctcttgttggtgctttccttagtgattcttattggggaagataca |
115 |
Q |
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|||||| |||||||| ||||||||||| || |||||||||||||| |||||| |||| |||||||| ||||| ||||| ||||||||||||| |
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| T |
2743487 |
tgctgcaaacaatgtgagcaagtggacagggacagtttacatcttttctcttcttggagctttcctcagtgactcttactggggaagataca |
2743578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 114
Target Start/End: Complemental strand, 3804663 - 3804574
Alignment:
| Q |
25 |
gctgctaacaatgtcagcaagtggactggcacagtttacatcttctctcttgttggtgctttccttagtgattcttattggggaagatac |
114 |
Q |
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| T |
3804663 |
gctgctaacaatgtcagcaagtggactggaactgtttacattttttcactcttgggagcattccttagtgattcttattggggaagatac |
3804574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 396047 - 396156
Alignment:
| Q |
25 |
gctgctaacaatgtcagcaagtggactggcacagtttacatcttctctcttgttggtgctttccttagtgattcttattggggaagatacaaaacatgtg |
124 |
Q |
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|||||||| ||||||||| ||||||||| || |||||||| || || || | || || |||||||||||||||||||||||||||||| |||||| | |
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| T |
396047 |
gctgctaataatgtcagcttgtggactggaactgtttacatattttcactcttgggagcattccttagtgattcttattggggaagatacttaacatgcg |
396146 |
T |
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| Q |
125 |
ctatctttca |
134 |
Q |
| |
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|||||||||| |
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| T |
396147 |
ctatctttca |
396156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 26329497 - 26329439
Alignment:
| Q |
172 |
ctatgaagcacgaatac-gacatggacactgaatacgacacggacactgaaacgccgac |
229 |
Q |
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||||||||||||||||| |||| |||||||| | ||||||| |||||||| |||||||| |
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| T |
26329497 |
ctatgaagcacgaatacagacacggacactggacacgacacagacactgacacgccgac |
26329439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 29510419 - 29510361
Alignment:
| Q |
172 |
ctatgaagcacgaatac-gacatggacactgaatacgacacggacactgaaacgccgac |
229 |
Q |
| |
|
|||||||||||| |||| ||||||||||| | | |||||||||||||||| |||||||| |
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| T |
29510419 |
ctatgaagcacggatactgacatggacaccggacacgacacggacactgacacgccgac |
29510361 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 10335403 - 10335343
Alignment:
| Q |
170 |
ttctatgaagcacgaatacga-catggacactgaatacgacacggacactgaaacgccgac |
229 |
Q |
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|||||||||||||| |||||| || |||||| | | |||||||||||||||| |||||||| |
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| T |
10335403 |
ttctatgaagcacggatacgaacacggacaccggacacgacacggacactgacacgccgac |
10335343 |
T |
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