View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14927_low_42 (Length: 243)
Name: NF14927_low_42
Description: NF14927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14927_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 1556887 - 1557095
Alignment:
| Q |
19 |
catatttttcctcaatttcatctaaatgagtgatttatttcaacgtttatgtttgttttgaactttaaaagcaatacaaacacctaatggctaatgtatt |
118 |
Q |
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| T |
1556887 |
catatttttcctcaatttcatctaaatgagtgatttatttcaacgtttatgtttgttttgaactttaaaagcaatacaaacacctaatggctaatgtatt |
1556986 |
T |
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| Q |
119 |
tcagaattgtgaatttcacaaaaagaacaatggatatgtacatttttatgaacaataaggttgtttttaagattgggataaaagatcttatgctcaatga |
218 |
Q |
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| T |
1556987 |
tcagaattgtgaatttcccaaaaagaacaatggatatgtacatttttatgaacaataaggttgtttttaagattgggataaaagatcttatgctcaatga |
1557086 |
T |
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| Q |
219 |
aaaacaaga |
227 |
Q |
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| T |
1557087 |
aaaacaaga |
1557095 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 6773280 - 6773213
Alignment:
| Q |
137 |
caaaaagaacaatggatatgtacatttttatgaacaataaggttgtttttaagattgggataaaagat |
204 |
Q |
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| T |
6773280 |
caaagagaacaatggatatgtacctttttatgaacagtaaggttctgtttaagactgtgagaaaagat |
6773213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 16351116 - 16351067
Alignment:
| Q |
29 |
ctcaatttcatctaaatgagtgatttatttcaacgtttatgtttgttttg |
78 |
Q |
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| T |
16351116 |
ctcaattttatctaaatgagtgatttgtttcgacgtttatgtttcttttg |
16351067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 4078906 - 4078962
Alignment:
| Q |
22 |
atttttcctcaatttcatctaaatgagtgatttatttcaacgtttatgtttgttttg |
78 |
Q |
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| T |
4078906 |
attttttctcaattttatctaaatgggtgatttgtttcgacgtttatgtttcttttg |
4078962 |
T |
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