View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14927_low_43 (Length: 235)
Name: NF14927_low_43
Description: NF14927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14927_low_43 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 31702867 - 31703073
Alignment:
| Q |
18 |
tcatgatgttgagtttcttcatcaaatggaagttgtttcaccattattatcacgaactaaatactctgataaatttggtatcacgtctgcttctacaatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31702867 |
tcatgatgttgagtttcttcatcaaatggaagttgtttcaccattattatcacgaactaaatactctgataaatttggtatcacctctgcttctacaatg |
31702966 |
T |
|
| Q |
118 |
tgaattaggaaaagaaggtgaaagtagcttagttgaatgggaagagattatcataaattttgcctagagtagtagttaaatatttgtggaattattatta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
31702967 |
tgaattaggaaaagaaggtgaaagtagctttgttgaatgggaagagattatcataaattttgcctagagtagtagttaaatttttgtggaattattatta |
31703066 |
T |
|
| Q |
218 |
tattctt |
224 |
Q |
| |
|
||||||| |
|
|
| T |
31703067 |
tattctt |
31703073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 31737224 - 31737434
Alignment:
| Q |
18 |
tcatgatgttgagtttcttcatcaaatggaagttgtttcaccattattatcacgaactaaatactctgataaatttggtatcacgtctgcttctacaatg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31737224 |
tcatgatgttgagtttcttcatcaaatggcagttgtttcaccattattatcacgaactaaatactctgataaatttggtatcacctctgcttctacaatg |
31737323 |
T |
|
| Q |
118 |
----tgaattaggaaaagaaggtgaaagtagcttagttgaatgggaagagattatcataaattttgcctagagtagtagttaaatatttgtggaattatt |
213 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31737324 |
tgaatgaatcaggaaaagaaggtgaaagtagctttgttgaaaggaaagagattatcataaattttgcctagagtagtagttaaatttttgtggaattatt |
31737423 |
T |
|
| Q |
214 |
attatattctt |
224 |
Q |
| |
|
||||||||||| |
|
|
| T |
31737424 |
attatattctt |
31737434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University