View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14927_low_45 (Length: 233)
Name: NF14927_low_45
Description: NF14927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14927_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 32892715 - 32892596
Alignment:
| Q |
1 |
aaaaggactatgaagtgaaatagaaatagtataaaatttataagaaggttccaggaatcaagggtcgagatcatgtgactagacccataagacaaggaaa |
100 |
Q |
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| T |
32892715 |
aaaaggactatgaagtgaaatagaaatagtataaaatttataagaaggttccaggaatcaagggtcgagatcatgtgactagacccataagacaaggaaa |
32892616 |
T |
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| Q |
101 |
taacccaaactttgaggttc |
120 |
Q |
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|||||||||||||||||||| |
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| T |
32892615 |
taacccaaactttgaggttc |
32892596 |
T |
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Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 32892551 - 32892501
Alignment:
| Q |
165 |
atctgaattatccaaatcacactttgtgtttctttctacacactctctcat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32892551 |
atctgaattatccaaatcacactttgtgtttctttctacacactctctcat |
32892501 |
T |
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