View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14927_low_50 (Length: 203)
Name: NF14927_low_50
Description: NF14927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14927_low_50 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 164; Significance: 7e-88; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 3056903 - 3057070
Alignment:
| Q |
19 |
gatgaagaagatgaagacaaagcaattttaactgattgggcttatgattgctacaaagatggtgctttaggtgcattggttgagggtgacaatgaagcat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
3056903 |
gatgaagaagatgaagacaaagcaattttaactgattgggcttatgattgctacaaagatggtgctttatgtgcattggttgagggtgacaatgaagcat |
3057002 |
T |
|
| Q |
119 |
tggaggacaaggaaaatttggagaaattggtaatgattgctctttggtgtgttcaagaggatccatat |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3057003 |
tggaggacaaggaaaatttggagaaattggtaatgattgctctttggtgtgttcaagaggatccatat |
3057070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 19 - 184
Target Start/End: Original strand, 3036035 - 3036200
Alignment:
| Q |
19 |
gatgaagaagatgaagacaaagcaattttaactgattgggcttatgattgctacaaagatggtgctttaggtgcattggttgagggtgacaatgaagcat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3036035 |
gatgaagaagatgaagacaaagcaattttaactgattgggcttatgattgctacaatgatggtgctttagatgcattggttgagggtgacaatgaagcat |
3036134 |
T |
|
| Q |
119 |
tggaggacaaggaaaatttggagaaattggtaatgattgctctttggtgtgttcaagaggatccat |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3036135 |
tggaggacaaggaaaatttggagaaattggtaatgattgctctttggtgtgttcaagaggatccat |
3036200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 19 - 180
Target Start/End: Complemental strand, 3070009 - 3069848
Alignment:
| Q |
19 |
gatgaagaagatgaagacaaagcaattttaactgattgggcttatgattgctacaaagatggtgctttaggtgcattggttgagggtgacaatgaagcat |
118 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3070009 |
gatgaagaagatgaagacaaagctatcttaactgattgggcttatgattgctacaaatatggtgctttaggtgcattggttgagggtgacaatgaggcat |
3069910 |
T |
|
| Q |
119 |
tggaggacaaggaaaatttggagaaattggtaatgattgctctttggtgtgttcaagaggat |
180 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
3069909 |
tggaggacaaggaaaatttggagaaattggtaaagattgctatttggtgtgttcaagaggat |
3069848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 23 - 186
Target Start/End: Complemental strand, 3049044 - 3048881
Alignment:
| Q |
23 |
aagaagatgaagacaaagcaattttaactgattgggcttatgattgctacaaagatggtgctttaggtgcattggttgagggtgacaatgaagcattgga |
122 |
Q |
| |
|
||||| ||||| ||||||| || |||||||| ||||||||||| ||||||||||| ||| | ||| | | |||||||||||||||||||| |||||| | |
|
|
| T |
3049044 |
aagaaaatgaatacaaagctatcttaactgaatgggcttatgactgctacaaagaaggtattctagatcccttggttgagggtgacaatgaggcattgaa |
3048945 |
T |
|
| Q |
123 |
ggacaaggaaaatttggagaaattggtaatgattgctctttggtgtgttcaagaggatccatat |
186 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
3048944 |
ggacaaggaaaatttggagaaattggtaaagattgctatttggtgtgttcaagaggatccatat |
3048881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 74
Target Start/End: Original strand, 28445708 - 28445739
Alignment:
| Q |
43 |
attttaactgattgggcttatgattgctacaa |
74 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
28445708 |
attttaactgattgggcttatgattgctacaa |
28445739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 28488302 - 28488343
Alignment:
| Q |
30 |
tgaagacaaagcaattttaactgattgggcttatgattgcta |
71 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
28488302 |
tgaagaaaaagggattttaactgattgggcttatgattgcta |
28488343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 71
Target Start/End: Original strand, 28466554 - 28466582
Alignment:
| Q |
43 |
attttaactgattgggcttatgattgcta |
71 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
28466554 |
attttaactgattgggcttatgattgcta |
28466582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University