View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14927_low_8 (Length: 490)
Name: NF14927_low_8
Description: NF14927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14927_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 13 - 472
Target Start/End: Complemental strand, 38803012 - 38802554
Alignment:
| Q |
13 |
aatatctaaaagtggcacataccagaaatcagtttggcaaagtaagttgttttcaaattttgttattgagaagttacatttctttggtgcaaaatcttgt |
112 |
Q |
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| T |
38803012 |
aatatctaaaagtggcacataccagaaatcagtttggcaaagtaagttgttttcacattttgttattgagaagttacatttctttggtgaaaaatcgtgt |
38802913 |
T |
|
| Q |
113 |
gcaatattgttcaatatagaataaccaaccatatatacactaaacatggacagccacattcttttgtgtcttacttttactcttatcaaaatcacacata |
212 |
Q |
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| T |
38802912 |
gcaatattgttcaatatagaataaccaaccatatatacactaaacatggacagccacatt-ttttgtgtcttacttttactcttatcaaaatcacacata |
38802814 |
T |
|
| Q |
213 |
aaaatccgttaaccccgttgatccgttcctaatagattaggatatgatttaaatacgaggcataacaaaatgtctatatttttatcatagtttctatggt |
312 |
Q |
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||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38802813 |
aaaatccgttagccccgttgatccgttccttatagattaggatatgatttaaatacgaggcataacaaaatgtctatagttttatcatagtttctatggt |
38802714 |
T |
|
| Q |
313 |
taaaacaccccatgactctaacatcaagataccattcaattggtcatatatcttgaaaacgtagcattaataacaccttaatttgtatagcttcttgttc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38802713 |
taaaacaccccatgactctaacatcaagataccattcaattggtcatatatcttgaaaacgtagcattaataacaccttaatttgtatagcttcttgttc |
38802614 |
T |
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| Q |
413 |
ttaggtccctcacctcttcattcctccatggatcaaaagcagggaatggtaagcctaaac |
472 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38802613 |
ttaggtccctcacctcttcattcctccatggatcaaaagcagggaatggtaagcctaaac |
38802554 |
T |
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