View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14927_low_9 (Length: 479)

Name: NF14927_low_9
Description: NF14927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14927_low_9
NF14927_low_9
[»] chr5 (13 HSPs)
chr5 (15-272)||(18000625-18000891)
chr5 (313-421)||(29340999-29341107)
chr5 (321-421)||(31653039-31653139)
chr5 (314-377)||(9460599-9460662)
chr5 (313-418)||(27428844-27428949)
chr5 (313-389)||(3057452-3057528)
chr5 (349-428)||(2984389-2984468)
chr5 (331-422)||(18653364-18653455)
chr5 (313-379)||(11357695-11357761)
chr5 (313-434)||(11775784-11775906)
chr5 (313-434)||(34827183-34827305)
chr5 (312-377)||(3440888-3440953)
chr5 (313-429)||(10361977-10362093)
[»] chr3 (15 HSPs)
chr3 (333-421)||(10474421-10474509)
chr3 (313-421)||(29586340-29586448)
chr3 (313-381)||(33632866-33632934)
chr3 (342-434)||(1995435-1995527)
chr3 (331-381)||(44637986-44638036)
chr3 (313-434)||(47914130-47914251)
chr3 (312-420)||(28229364-28229472)
chr3 (323-420)||(25285810-25285907)
chr3 (313-374)||(50462643-50462704)
chr3 (314-381)||(52859272-52859340)
chr3 (312-422)||(33979937-33980047)
chr3 (305-422)||(48950613-48950730)
chr3 (313-378)||(51982548-51982613)
chr3 (313-380)||(24754702-24754770)
chr3 (313-380)||(24763699-24763767)
[»] chr4 (14 HSPs)
chr4 (313-380)||(48914481-48914548)
chr4 (313-421)||(23474115-23474223)
chr4 (314-422)||(50483520-50483628)
chr4 (318-378)||(28405444-28405504)
chr4 (314-376)||(33841768-33841830)
chr4 (313-434)||(36532617-36532737)
chr4 (330-379)||(42844167-42844216)
chr4 (331-387)||(5817973-5818029)
chr4 (331-422)||(1871280-1871371)
chr4 (319-370)||(5815271-5815322)
chr4 (313-434)||(19901880-19902002)
chr4 (313-434)||(39862508-39862630)
chr4 (313-435)||(56453783-56453905)
chr4 (313-434)||(56558270-56558392)
[»] chr2 (19 HSPs)
chr2 (319-378)||(36929763-36929822)
chr2 (333-417)||(19905889-19905973)
chr2 (333-428)||(19908777-19908871)
chr2 (336-435)||(31618753-31618852)
chr2 (313-381)||(34511988-34512056)
chr2 (313-421)||(38397085-38397193)
chr2 (315-381)||(15709812-15709878)
chr2 (319-421)||(35315257-35315359)
chr2 (331-380)||(2063399-2063448)
chr2 (319-434)||(4446864-4446980)
chr2 (314-422)||(30857642-30857750)
chr2 (342-381)||(30709154-30709193)
chr2 (323-377)||(30709230-30709284)
chr2 (313-434)||(35316816-35316938)
chr2 (313-380)||(11864914-11864982)
chr2 (335-387)||(12363104-12363156)
chr2 (331-379)||(22061450-22061498)
chr2 (313-381)||(28853093-28853161)
chr2 (335-375)||(43077944-43077984)
[»] chr7 (7 HSPs)
chr7 (313-381)||(5463866-5463934)
chr7 (313-376)||(47271110-47271173)
chr7 (331-427)||(40023237-40023333)
chr7 (347-381)||(29844335-29844369)
chr7 (329-427)||(32915954-32916052)
chr7 (318-375)||(33608844-33608901)
chr7 (313-381)||(7712330-7712398)
[»] chr6 (5 HSPs)
chr6 (313-381)||(17828531-17828599)
chr6 (347-434)||(2800608-2800695)
chr6 (319-381)||(7215820-7215883)
chr6 (319-370)||(29229149-29229200)
chr6 (313-434)||(4804439-4804561)
[»] chr8 (3 HSPs)
chr8 (313-380)||(40695210-40695277)
chr8 (315-381)||(18689535-18689601)
chr8 (357-430)||(10672519-10672592)
[»] chr1 (11 HSPs)
chr1 (319-381)||(39426254-39426317)
chr1 (330-422)||(32887760-32887852)
chr1 (330-381)||(26860030-26860081)
chr1 (348-422)||(5047379-5047453)
chr1 (322-380)||(24977285-24977343)
chr1 (313-375)||(47296102-47296164)
chr1 (313-418)||(30210672-30210777)
chr1 (319-368)||(49384631-49384680)
chr1 (394-434)||(26768886-26768926)
chr1 (333-421)||(32618805-32618892)
chr1 (319-381)||(35534752-35534813)
[»] scaffold0062 (1 HSPs)
scaffold0062 (315-381)||(58724-58790)
[»] scaffold0252 (1 HSPs)
scaffold0252 (299-387)||(10423-10511)
[»] scaffold0126 (1 HSPs)
scaffold0126 (313-434)||(22405-22526)
[»] scaffold0121 (1 HSPs)
scaffold0121 (314-434)||(29533-29653)


Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 15 - 272
Target Start/End: Original strand, 18000625 - 18000891
Alignment:
Q  15 ggttgaggtttgaaccccatttcgcatatttattttaaggataaaattctagacactaaaatatacattgtattcaatgaatggagcaaactgatgatag 114  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  18000625 ggttggggtttgaaccccatttcgcttatttattttaaggataaaattctagacactaaaatatacattgtattcaatgaatggagcaaactgatgatac 18000724  T
Q  115 tatgac--atgcactcatatgttagaatgtgttagaagtg-------gcctaaacttaaataacatccaaatagtaatataaatcaatcatattgctaaa 205  Q
    || |||  ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18000725 taggacatatgcactcatatgttagaatgtgttagaagtgtttaagagcctaaacttaaataacatccaaatagtaatataaatcaatcatattgttaaa 18000824  T
Q  206 ttgatggtaaatagcacttgaaataaaataagatcataaatcaatcaacataatgtcatgaactcat 272  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  18000825 ttgatggtaaatagtacttgaaacaaaataagatcataaatcaatcaacataatggcatgaactcat 18000891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 313 - 421
Target Start/End: Complemental strand, 29341107 - 29340999
Alignment:
Q  313 agatcttctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaatagataatgaatccgattattatgtgagtctcaccat 412  Q
    ||||| ||||||||| ||| ||||||| |||||| |||||| |||||||||||||||| |||||||||| ||  ||| | ||||| ||| ||| ||||||    
T  29341107 agatcctctccatttggtataataaatggagtatgcaatttggagagagatagacacagaaaatagatagtgggtcctactattaagtgggtcccaccat 29341008  T
Q  413 cattaatta 421  Q
    |||||||||    
T  29341007 cattaatta 29340999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 321 - 421
Target Start/End: Complemental strand, 31653139 - 31653039
Alignment:
Q  321 tccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaatagataatgaatccgattattatgtgagtctcaccatcattaatt 420  Q
    ||||||| ||| ||||||| | |||| |||||| |||||||||| ||||||||||||||||  || ||| | ||||| ||||||||||| ||||||||||    
T  31653139 tccatttggtataataaatggcgtatgcaatttggagagagataaacacataaaatagatagcgagtcctactattaagtgagtctcacaatcattaatt 31653040  T
Q  421 a 421  Q
    |    
T  31653039 a 31653039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 9460599 - 9460662
Alignment:
Q  314 gatcttctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaata 377  Q
    |||| ||||||||| |||||||||||||||||| |||||| |||||||||||||||||| ||||    
T  9460599 gatcctctccatttggtaaaataaatagagtatgcaatttggagagagatagacacatataata 9460662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 418
Target Start/End: Original strand, 27428844 - 27428949
Alignment:
Q  313 agatcttctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaatagataatgaatccgattattatgtgagtctcaccat 412  Q
    ||||| ||||||||||  ||||||||||||  || |||||| || ||||||||||||| |||||||||  ||||||| |  |||| ||||||  ||||||    
T  27428844 agatcctctccatttataaaaataaatagaagatgcaatttggaaagagatagacacaaaaaatagatggtgaatcctaccattaagtgagttccaccat 27428943  T
Q  413 cattaa 418  Q
    ||||||    
T  27428944 cattaa 27428949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 389
Target Start/End: Complemental strand, 3057528 - 3057452
Alignment:
Q  313 agatcttctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaatagataatgaatcc 389  Q
    ||||| ||||||||| |||||||||||||||| | |||||  |||||||||||||| | |||| |||| ||| ||||    
T  3057528 agatcctctccattttgtaaaataaatagagttttcaattcggagagagatagacaaaaaaaaaagatgatggatcc 3057452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 428
Target Start/End: Original strand, 2984389 - 2984468
Alignment:
Q  349 aattttgagagagatagacacataaaatagataatgaatccgattattatgtgagtctcaccatcattaattatctttta 428  Q
    ||||| |||||||||||||||||||||||  | |||||||| || | ||  || ||| |||||||||||||||| |||||    
T  2984389 aatttggagagagatagacacataaaataagtgatgaatcctatcactaaatgggtcccaccatcattaattatttttta 2984468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 422
Target Start/End: Complemental strand, 18653455 - 18653364
Alignment:
Q  331 aaaataaatagagtatacaattttgagagagatagacacataaaatagataatgaatccgattattatgtgagtctcaccatcattaattat 422  Q
    ||||||||| |||| | ||||||  ||||||||||||||| |||||||||| ||| | | |  |||| |||||||||||||| | |||||||    
T  18653455 aaaataaatggagtttgcaatttgaagagagatagacacaaaaaatagatagtgagttctaccattaagtgagtctcaccattaataattat 18653364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 379
Target Start/End: Complemental strand, 11357761 - 11357695
Alignment:
Q  313 agatcttctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaataga 379  Q
    ||||| ||| ||||| ||| |||||||||||||| ||||||  ||| ||||||||| ||||||||||    
T  11357761 agatcatcttcatttggtataataaatagagtatgcaatttgaagatagatagacatataaaataga 11357695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 434
Target Start/End: Complemental strand, 11775906 - 11775784
Alignment:
Q  313 agatcttctccatttagtaaaataaatagagtata-caattttgagagagatagacacataaaatagataatgaatccgattattatgtgagtctcacca 411  Q
    ||||| ||||||||| ||||||||||| |||| |  ||| || |||||||||||||||| |||||||||  || |||| |  | || ||| ||| ||||     
T  11775906 agatcctctccatttggtaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtggatcctaccactaagtgggtcccaccg 11775807  T
Q  412 tcattaattatcttttacctttt 434  Q
    ||||||||||| |||||| ||||    
T  11775806 tcattaattatattttacttttt 11775784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 434
Target Start/End: Complemental strand, 34827305 - 34827183
Alignment:
Q  313 agatcttctccatttagtaaaataaatagag-tatacaattttgagagagatagacacataaaatagataatgaatccgattattatgtgagtctcacca 411  Q
    ||||| ||||||||||| ||||||||| ||| ||| ||| || |||||||||||||| | |||||||||  || |||| |  | || ||| ||| |||||    
T  34827305 agatcatctccatttagcaaaataaatggagttatgcaagttggagagagatagacaaaaaaaatagatggtggatcctaccactaagtgggtcccacca 34827206  T
Q  412 tcattaattatcttttacctttt 434  Q
    || |||||||| |||||| ||||    
T  34827205 tctttaattatattttacttttt 34827183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 377
Target Start/End: Complemental strand, 3440953 - 3440888
Alignment:
Q  312 gagatcttctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaata 377  Q
    |||||| |||||||||| |||||||||| |||  |||||||  || ||||||||||||| ||||||    
T  3440953 gagatcctctccatttattaaaataaatggagattacaattaggaaagagatagacacaaaaaata 3440888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 429
Target Start/End: Original strand, 10361977 - 10362093
Alignment:
Q  313 agatcttctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaatagataatgaatccgattattatgtgagtctcaccat 412  Q
    ||||| ||||||||||  ||| ||||| ||  || |||||  |||||||||||| ||||||||| | || || |||| |  |||| ||| |||||||| |    
T  10361977 agatcctctccatttataaaactaaatggaagatgcaattaggagagagatagagacataaaattggtagtggatcctaccattaagtgggtctcaccgt 10362076  T
Q  413 cattaattatcttttac 429  Q
    |||||||||| ||||||    
T  10362077 cattaattattttttac 10362093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 333 - 421
Target Start/End: Original strand, 10474421 - 10474509
Alignment:
Q  333 aataaatagagtatacaattttgagagagatagacacataaaatagataatgaatccgattattatgtgagtctcaccatcattaatta 421  Q
    ||||||| |||||| ||||||||||||| ||||||||||||||||||||||| |||| | ||||| ||||||  ||||| |||||||||    
T  10474421 aataaatggagtatgcaattttgagagatatagacacataaaatagataatggatcctactattaagtgagttccaccaacattaatta 10474509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 313 - 421
Target Start/End: Complemental strand, 29586448 - 29586340
Alignment:
Q  313 agatcttctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaatagataatgaatccgattattatgtgagtctcaccat 412  Q
    ||||| ||| ||||||| | ||||||| |||||| || ||| ||||||||||||||||||||||||||| | | ||  | ||||| ||| ||||||||||    
T  29586448 agatcctcttcatttagcataataaatggagtatgcagtttggagagagatagacacataaaatagatagtaagtcttactattaagtgggtctcaccat 29586349  T
Q  413 cattaatta 421  Q
    |||||||||    
T  29586348 cattaatta 29586340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 313 - 381
Target Start/End: Complemental strand, 33632934 - 33632866
Alignment:
Q  313 agatcttctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaatagata 381  Q
    ||||||||||||||| ||| ||||||| ||| || |||||| |||||||||||||||||||||||||||    
T  33632934 agatcttctccatttggtataataaatggagcatgcaatttggagagagatagacacataaaatagata 33632866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 342 - 434
Target Start/End: Complemental strand, 1995527 - 1995435
Alignment:
Q  342 agtatacaattttgagagagatagacacataaaatagataatgaatccgattattatgtgagtctcaccatcattaattatcttttacctttt 434  Q
    |||| |||||||  ||||||||||||| | |||||||||||||| ||| |  | || |||||||||||||||||||||||| |||||| ||||    
T  1995527 agtacacaatttgaagagagatagacatagaaaatagataatgagtcctaccaataagtgagtctcaccatcattaattattttttacttttt 1995435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 331 - 381
Target Start/End: Complemental strand, 44638036 - 44637986
Alignment:
Q  331 aaaataaatagagtatacaattttgagagagatagacacataaaatagata 381  Q
    ||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  44638036 aaaataaatggagtatgcaattttgagagagataaacacataaaatagata 44637986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 434
Target Start/End: Original strand, 47914130 - 47914251
Alignment:
Q  313 agatcttctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaatagataatgaatccgattattatgtgagtctcaccat 412  Q
    ||||| ||||||||||  ||||||||||||  ||  ||||| ||||| |||| | ||||||||||| || |  |||| ||||||| ||||||| ||||||    
T  47914130 agatcctctccatttataaaaataaatagaagatgtaatttagagagtgatatagacataaaataggtagtagatcctattattaagtgagtcccaccat 47914229  T
Q  413 cattaattatcttttacctttt 434  Q
    |||||||||  |||||| ||||    
T  47914230 cattaattactttttacgtttt 47914251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 420
Target Start/End: Original strand, 28229364 - 28229472
Alignment:
Q  312 gagatcttctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaatagataatgaatccgattattatgtgagtctcacca 411  Q
    |||||| |||||||||| |||||||||| |||| | |||||  || ||| ||||||||| ||||||| |  ||| ||| || ||||  ||||||||||||    
T  28229364 gagatcctctccatttattaaaataaatggagtgtgcaattaggaaagatatagacacaaaaaataggtggtgagtcctatcattaaatgagtctcacca 28229463  T
Q  412 tcattaatt 420  Q
    |||||||||    
T  28229464 tcattaatt 28229472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 323 - 420
Target Start/End: Original strand, 25285810 - 25285907
Alignment:
Q  323 catttagtaaaataaatagagtatacaattttgagagagatagacacataaaatagataatgaatccgattattatgtgagtctcaccatcattaatt 420  Q
    ||||| ||||||| ||| ||| || ||||||  |||||||||||||||||||||||||| || |||| || ||||  |||| | ||||||||| ||||    
T  25285810 catttggtaaaattaatggagaatgcaatttatagagagatagacacataaaatagatagtggatcctatcattaaatgagacccaccatcatcaatt 25285907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 313 - 374
Target Start/End: Original strand, 50462643 - 50462704
Alignment:
Q  313 agatcttctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaa 374  Q
    ||||| ||||||||||||| ||||||| ||| || |||||| |||||||||||| |||||||    
T  50462643 agatcctctccatttagtataataaatggagcatccaatttggagagagatagaaacataaa 50462704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 381
Target Start/End: Complemental strand, 52859340 - 52859272
Alignment:
Q  314 gatcttctccatttagtaaaataaat-agagtatacaattttgagagagatagacacataaaatagata 381  Q
    |||| |||||||||  |||||||||| | | || ||||||| |||||||||||||||||||||||||||    
T  52859340 gatcctctccatttgataaaataaatgaaaatacacaatttagagagagatagacacataaaatagata 52859272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 422
Target Start/End: Complemental strand, 33980047 - 33979937
Alignment:
Q  312 gagatcttctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaatagataatgaatccgattattatgtgagtctcacca 411  Q
    |||||| |||| ||||| |||||||||| |||  |||||||   | ||||||||||||| |||||| ||  ||||||| || ||||  | |||||||| |    
T  33980047 gagatcctctcgatttattaaaataaatggagattacaattagaaaagagatagacacaaaaaataaatggtgaatcctatcattaaataagtctcacta 33979948  T
Q  412 tcattaattat 422  Q
    |||||||||||    
T  33979947 tcattaattat 33979937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 422
Target Start/End: Complemental strand, 48950730 - 48950613
Alignment:
Q  305 atgagtcgagatcttctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaatagataatgaatccgattattatgtgagt 404  Q
    |||||| |||||| ||||||||||  ||| ||||| |||  ||| ||| | | ||| | ||||||||||||||| |  || |||| || ||||  |||||    
T  48950730 atgagttgagatcctctccatttataaaattaaatggagattaccattattaaagataaagacacataaaataggtggtggatcctatcattaaatgagt 48950631  T
Q  405 ctcaccatcattaattat 422  Q
    ||||||||||||||||||    
T  48950630 ctcaccatcattaattat 48950613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 378
Target Start/End: Original strand, 51982548 - 51982613
Alignment:
Q  313 agatcttctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaatag 378  Q
    ||||| ||||||||||  ||||||||| ||  || |||||| |||||||||||| |||||||||||    
T  51982548 agatcctctccatttataaaaataaatggaagatgcaatttggagagagatagatacataaaatag 51982613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 380
Target Start/End: Complemental strand, 24754770 - 24754702
Alignment:
Q  313 agatcttctccatttagtaaaataaatagagtat-acaattttgagagagatagacacataaaatagat 380  Q
    ||||| ||||||||| | ||||||||| |||| | |||| || |||||||||||||||| |||||||||    
T  24754770 agatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacacaaaatagat 24754702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 380
Target Start/End: Complemental strand, 24763767 - 24763699
Alignment:
Q  313 agatcttctccatttagtaaaataaatagagtat-acaattttgagagagatagacacataaaatagat 380  Q
    ||||| ||||||||| | ||||||||| |||| | |||| || |||||||||||||||| |||||||||    
T  24763767 agatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacacaaaatagat 24763699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 313 - 380
Target Start/End: Original strand, 48914481 - 48914548
Alignment:
Q  313 agatcttctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaatagat 380  Q
    ||||||||||||||||| ||||||||| ||| || |||||| ||||||||| ||||||||||||||||    
T  48914481 agatcttctccatttagcaaaataaatggagaatgcaatttagagagagatcgacacataaaatagat 48914548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 313 - 421
Target Start/End: Complemental strand, 23474223 - 23474115
Alignment:
Q  313 agatcttctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaatagataatgaatccgattattatgtgagtctcaccat 412  Q
    ||||| ||||||||||| | ||||||| |||||| |||||| | ||||||||||||||||||||||||  ||  ||| | ||||  |||| || ||||||    
T  23474223 agatcctctccatttagcataataaatggagtatgcaatttggggagagatagacacataaaatagatggtgggtcctactattgagtgaatcccaccat 23474124  T
Q  413 cattaatta 421  Q
    |||||||||    
T  23474123 cattaatta 23474115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 314 - 422
Target Start/End: Original strand, 50483520 - 50483628
Alignment:
Q  314 gatcttctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaatagataatgaatccgattattatgtgagtctcaccatc 413  Q
    |||| ||||||||||| ||||||||| |||||| |||||| |||| |||||||||| ||||||||||| |  |||| |  |||| ||||||| ||  |||    
T  50483520 gatcatctccatttagcaaaataaattgagtatgcaatttggagacagatagacacgtaaaatagatattcgatcccaccattaagtgagtcacattatc 50483619  T
Q  414 attaattat 422  Q
    |||||||||    
T  50483620 attaattat 50483628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 378
Target Start/End: Complemental strand, 28405504 - 28405444
Alignment:
Q  318 ttctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaatag 378  Q
    |||| ||||||  |||||||||||||||| ||||||  |||||||||||||||||||||||    
T  28405504 ttcttcatttaacaaaataaatagagtatgcaatttcaagagagatagacacataaaatag 28405444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 376
Target Start/End: Original strand, 33841768 - 33841830
Alignment:
Q  314 gatcttctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaat 376  Q
    |||| |||||||||  |||| ||||| ||||||||||||| |||||||||||||||| |||||    
T  33841768 gatcctctccatttgttaaagtaaatggagtatacaatttggagagagatagacacaaaaaat 33841830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 313 - 434
Target Start/End: Complemental strand, 36532737 - 36532617
Alignment:
Q  313 agatcttctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaatagataatgaatccgattattatgtgagtctcaccat 412  Q
    ||||| ||||||| |  |||||||||| ||||  ||||||| ||||||||||||||||||||||| ||| || |||| || |||  ||| ||  ||||||    
T  36532737 agatcctctccatctgataaaataaatggagttcacaatttagagagagatagacacataaaataaatagtggatcctatcattcagtgggttccaccat 36532638  T
Q  413 cattaattatcttttacctttt 434  Q
     ||||||||| |||||| ||||    
T  36532637 -attaattattttttacttttt 36532617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 330 - 379
Target Start/End: Original strand, 42844167 - 42844216
Alignment:
Q  330 taaaataaatagagtatacaattttgagagagatagacacataaaataga 379  Q
    |||||||||||||||  ||||||| |||| ||||||||||||||||||||    
T  42844167 taaaataaatagagttaacaatttggagatagatagacacataaaataga 42844216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 387
Target Start/End: Complemental strand, 5818029 - 5817973
Alignment:
Q  331 aaaataaatagagtatacaattttgagagagatagacacataaaatagataatgaat 387  Q
    |||||||||  || ||||||||| |||||||||||||||| |||| |||||||||||    
T  5818029 aaaataaattaaggatacaatttggagagagatagacacaaaaaagagataatgaat 5817973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 422
Target Start/End: Complemental strand, 1871371 - 1871280
Alignment:
Q  331 aaaataaatagagtatacaattttgagagagatagacacataaaatagataatgaatccgattattatgtgagtctcaccatcattaattat 422  Q
    ||||||||| |||||| |||||| |||||||||||||| | || ||||||| || |||| | || || ||| ||| || |||||||||||||    
T  1871371 aaaataaatggagtatgcaatttggagagagatagacaaaaaatatagatagtggatcctactactaagtgggtcccatcatcattaattat 1871280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 370
Target Start/End: Original strand, 5815271 - 5815322
Alignment:
Q  319 tctccatttagtaaaataaatagagtatacaattttgagagagatagacaca 370  Q
    |||||||||  |||||||||| ||||| | ||||||||||||||||||||||    
T  5815271 tctccatttgataaaataaatggagtacaaaattttgagagagatagacaca 5815322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 434
Target Start/End: Original strand, 19901880 - 19902002
Alignment:
Q  313 agatcttctccatttagtaaaataaatagagtata-caattttgagagagatagacacataaaatagataatgaatccgattattatgtgagtctcacca 411  Q
    ||||| ||||||||| ||||||||||| |||| |  ||| || |||||||||||||||| |||||||||  ||  ||| |  | || ||| ||| |||||    
T  19901880 agatcctctccatttggtaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccacca 19901979  T
Q  412 tcattaattatcttttacctttt 434  Q
    ||||||||||| |||||| ||||    
T  19901980 tcattaattatattttacttttt 19902002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 434
Target Start/End: Complemental strand, 39862630 - 39862508
Alignment:
Q  313 agatcttctccatttagtaaaataaatagagtata-caattttgagagagatagacacataaaatagataatgaatccgattattatgtgagtctcacca 411  Q
    ||||| |||||||||  ||||||||||||| | |  ||| ||||||||||||||||||| |||||||||  ||  ||| || | ||  |||||  |||||    
T  39862630 agatcctctccatttgataaaataaatagaattttgcaagtttgagagagatagacacaaaaaatagatggtgtgtcctatcactaaatgagttccacca 39862531  T
Q  412 tcattaattatcttttacctttt 434  Q
    ||||||||||| |||||| ||||    
T  39862530 tcattaattatattttacttttt 39862508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 435
Target Start/End: Original strand, 56453783 - 56453905
Alignment:
Q  313 agatcttctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaatagataatgaatccgattattatgtgagtctcaccat 412  Q
    ||||| ||||||||||   |||||||| ||  || |||||| |||||||||||||||| ||||||| |  ||  ||| || |||| ||| ||| ||||||    
T  56453783 agatcctctccatttatagaaataaatggaagatgcaatttggagagagatagacacaaaaaataggtggtgggtcctatcattaagtgggtcccaccat 56453882  T
Q  413 cattaattatcttttacctttta 435  Q
    |||| ||||| |||||| |||||    
T  56453883 cattcattattttttacttttta 56453905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 434
Target Start/End: Complemental strand, 56558392 - 56558270
Alignment:
Q  313 agatcttctccatttagtaaaataaatagagtata-caattttgagagagatagacacataaaatagataatgaatccgattattatgtgagtctcacca 411  Q
    ||||| ||||||||| | ||||||||| |||| |  ||| || |||||||||||||||| |||||||||  ||  ||| || | || ||| ||| |||||    
T  56558392 agatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctatcactaagtgggtcccacca 56558293  T
Q  412 tcattaattatcttttacctttt 434  Q
    ||||||||||| |||||| ||||    
T  56558292 tcattaattatattttacttttt 56558270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 319 - 378
Target Start/End: Complemental strand, 36929822 - 36929763
Alignment:
Q  319 tctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaatag 378  Q
    ||||||||||| ||||||||| |||||| |||||| ||||||||||||||||||||||||    
T  36929822 tctccatttagcaaaataaatggagtatgcaatttggagagagatagacacataaaatag 36929763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 333 - 417
Target Start/End: Complemental strand, 19905973 - 19905889
Alignment:
Q  333 aataaatagagtatacaattttgagagagatagacacataaaatagataatgaatccgattattatgtgagtctcaccatcatta 417  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||  ||   |  ||||||| ||||||| |||||||||||    
T  19905973 aataaatggagtatgcaattttgagagagatagacacataaaatagatggtgggacatattattaagtgagtcccaccatcatta 19905889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 333 - 428
Target Start/End: Complemental strand, 19908871 - 19908777
Alignment:
Q  333 aataaatagagtatacaattttgagagagatagacacataaaatagataatgaatccgattattatgtgagtctcaccatcattaattatctttta 428  Q
    ||||||| |||||| |||||| ||| ||||||||||||||||||||||| ||| ||| | | ||| ||| ||| |||||||||||||||| |||||    
T  19908871 aataaatggagtatgcaatttggag-gagatagacacataaaatagatagtgagtcctacttttaagtgggtcccaccatcattaattatttttta 19908777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 435
Target Start/End: Original strand, 31618753 - 31618852
Alignment:
Q  336 aaatagagtatacaattttgagagagatagacacataaaatagataatgaatccgattattatgtgagtctcaccatcattaattatcttttacctttta 435  Q
    |||| ||||||||||||| |||| ||||||| | |||||||||||| ||| ||  || |||| ||||||| ||| |||||||||||| |||||| |||||    
T  31618753 aaatggagtatacaatttggagaaagatagatatataaaatagatagtgagtcatatcattaagtgagtcccacaatcattaattattttttacttttta 31618852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 313 - 381
Target Start/End: Original strand, 34511988 - 34512056
Alignment:
Q  313 agatcttctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaatagata 381  Q
    ||||| |||| ||||  |||||||||||||| | ||||||| |||| ||||||||||||||||||||||    
T  34511988 agatcatctctatttgttaaaataaatagaggaaacaatttggagaaagatagacacataaaatagata 34512056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 313 - 421
Target Start/End: Complemental strand, 38397193 - 38397085
Alignment:
Q  313 agatcttctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaatagataatgaatccgattattatgtgagtctcaccat 412  Q
    ||||| ||||||||| ||| ||||||  |||||| ||||||  ||||||||||||| |||||||||||| ||  | | | ||||| ||||||| ||||||    
T  38397193 agatcctctccattttgtataataaacggagtatgcaatttgaagagagatagacaaataaaatagatagtgggtgctactattaagtgagtcccaccat 38397094  T
Q  413 cattaatta 421  Q
    || ||||||    
T  38397093 caataatta 38397085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 381
Target Start/End: Complemental strand, 15709878 - 15709812
Alignment:
Q  315 atcttctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaatagata 381  Q
    |||||||| |||||| ||||||||| || ||| |||||| |||||||||| ||| ||||||||||||    
T  15709878 atcttctcgatttagcaaaataaatggaatatgcaatttggagagagataaacatataaaatagata 15709812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 421
Target Start/End: Original strand, 35315257 - 35315359
Alignment:
Q  319 tctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaatagataatgaatccgattattatgtgagtctcaccatcattaa 418  Q
    ||||||||| | | ||||| | || ||| ||||||  ||||||||||||||||||||||||||||| |||  | |||||  |||||| |||||| |||||    
T  35315257 tctccatttggcataataagtggactatgcaatttgaagagagatagacacataaaatagataatggatcttactattaattgagtcccaccattattaa 35315356  T
Q  419 tta 421  Q
    |||    
T  35315357 tta 35315359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 331 - 380
Target Start/End: Complemental strand, 2063448 - 2063399
Alignment:
Q  331 aaaataaatagagtatacaattttgagagagatagacacataaaatagat 380  Q
    |||||||||||||| | |||||| |||||||||||||||| |||||||||    
T  2063448 aaaataaatagagtttgcaatttggagagagatagacacaaaaaatagat 2063399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 434
Target Start/End: Original strand, 4446864 - 4446980
Alignment:
Q  319 tctccatttagtaaaataaataga-gtatacaattttgagagagatagacacataaaatagataatgaatccgattattatgtgagtctcaccatcatta 417  Q
    |||||||||  |||||||||| || || ||||||||  |||||||||||||||||||||||||| || |||| |  | ||  || || |||| |||||||    
T  4446864 tctccatttgataaaataaatggaagtgtacaatttgaagagagatagacacataaaatagatagtggatcctaccactaattgggtttcactatcatta 4446963  T
Q  418 attatcttttacctttt 434  Q
    ||||| |||||| ||||    
T  4446964 attattttttacttttt 4446980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 422
Target Start/End: Original strand, 30857642 - 30857750
Alignment:
Q  314 gatcttctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaatagataatgaatccgattattatgtgagtctcaccatc 413  Q
    |||| |||||||||   ||||||||| ||||||  |||||  |||||| |||||||| ||||||||||||| |||| | |||||  ||  || |||||||    
T  30857642 gatcctctccatttcacaaaataaatggagtatgtaatttgaagagaggtagacacaaaaaatagataatggatcctactattaaatggatcacaccatc 30857741  T
Q  414 attaattat 422  Q
    |||||||||    
T  30857742 attaattat 30857750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 381
Target Start/End: Complemental strand, 30709193 - 30709154
Alignment:
Q  342 agtatacaattttgagagagatagacacataaaatagata 381  Q
    |||| ||||||| |||||||||||||||||||||||||||    
T  30709193 agtacacaatttggagagagatagacacataaaatagata 30709154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 377
Target Start/End: Complemental strand, 30709284 - 30709230
Alignment:
Q  323 catttagtaaaataaatagagtatacaattttgagagagatagacacataaaata 377  Q
    ||||||| | ||||| |||||||| |||||  |||||||||||||||||||||||    
T  30709284 catttagcataataattagagtatgcaattaggagagagatagacacataaaata 30709230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 434
Target Start/End: Complemental strand, 35316938 - 35316816
Alignment:
Q  313 agatcttctccatttagtaaaataaatagagtata-caattttgagagagatagacacataaaatagataatgaatccgattattatgtgagtctcacca 411  Q
    ||||| ||||||||| | ||||||||| |||| |  ||| || |||||||||||||||| |||||||||  || |||| |  | || ||| ||| |||||    
T  35316938 agatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtggatcctaccactaagtgggtcccacca 35316839  T
Q  412 tcattaattatcttttacctttt 434  Q
    ||||||||||| |||||| ||||    
T  35316838 tcattaattatattttacttttt 35316816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 380
Target Start/End: Complemental strand, 11864982 - 11864914
Alignment:
Q  313 agatcttctccatttagtaaaataaatagagtat-acaattttgagagagatagacacataaaatagat 380  Q
    ||||| ||||||||||  ||||||||| |||| | |||| || |||||||||||||||| |||||||||    
T  11864982 agatcctctccatttatcaaaataaatggagttttacaagttggagagagatagacacaaaaaatagat 11864914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 387
Target Start/End: Complemental strand, 12363156 - 12363104
Alignment:
Q  335 taaatagagtatacaattttgagagagatagacacataaaatagataatgaat 387  Q
    ||||| ||||||| ||||| ||| ||| |||||||| ||||||||||||||||    
T  12363156 taaatggagtatataatttagagggaggtagacacaaaaaatagataatgaat 12363104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 331 - 379
Target Start/End: Original strand, 22061450 - 22061498
Alignment:
Q  331 aaaataaatagagtatacaattttgagagagatagacacataaaataga 379  Q
    |||||||||  ||||| ||||||  ||||||||||||||||||||||||    
T  22061450 aaaataaatgaagtatgcaatttgaagagagatagacacataaaataga 22061498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 381
Target Start/End: Complemental strand, 28853161 - 28853093
Alignment:
Q  313 agatcttctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaatagata 381  Q
    ||||| ||||||||||  ||||||||| ||| ||||||||| || ||||||||||| | |||| |||||    
T  28853161 agatcctctccatttatcaaaataaatggaggatacaatttggaaagagatagacataaaaaagagata 28853093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 375
Target Start/End: Complemental strand, 43077984 - 43077944
Alignment:
Q  335 taaatagagtatacaattttgagagagatagacacataaaa 375  Q
    |||||||||||||||||||  ||||||||||||||| ||||    
T  43077984 taaatagagtatacaatttgaagagagatagacacaaaaaa 43077944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 313 - 381
Target Start/End: Original strand, 5463866 - 5463934
Alignment:
Q  313 agatcttctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaatagata 381  Q
    ||||| |||||||||  || |||||||| |||||||||||| |||||| ||| ||||||||||||||||    
T  5463866 agatcctctccatttgatataataaatatagtatacaatttggagagatataaacacataaaatagata 5463934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 313 - 376
Target Start/End: Original strand, 47271110 - 47271173
Alignment:
Q  313 agatcttctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaat 376  Q
    ||||| ||||||||||| ||||||||| |||| | |||||| |||||||||||||||| |||||    
T  47271110 agatcctctccatttagcaaaataaatggagtttgcaatttggagagagatagacacaaaaaat 47271173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 427
Target Start/End: Original strand, 40023237 - 40023333
Alignment:
Q  331 aaaataaatagagtatacaattttgagagagatagacacataaaatagataatgaatccgattattatgtgagtctcaccatcattaattatctttt 427  Q
    ||||||||  ||||||||||||| |||| ||||||||| ||||||||| ||||| |||  |  |||| ||| ||| ||||| |||||||||| ||||    
T  40023237 aaaataaaacgagtatacaatttggagaaagatagacatataaaatagttaatggatcttaccattaagtgggtcccaccaccattaattatttttt 40023333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 381
Target Start/End: Complemental strand, 29844369 - 29844335
Alignment:
Q  347 acaattttgagagagatagacacataaaatagata 381  Q
    ||||||| |||||||||||||||||||||||||||    
T  29844369 acaatttggagagagatagacacataaaatagata 29844335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 427
Target Start/End: Complemental strand, 32916052 - 32915954
Alignment:
Q  329 gtaaaataaatagagtatacaattttgagagagatagacacataaaatagataatgaatccgattattatgtgagtctcaccatcattaattatctttt 427  Q
    ||||||||||| ||| || ||||||  ||||||||||||||| |||||| ||| ||  ||| |  |||| ||||||| ||||||||| |||||| ||||    
T  32916052 gtaaaataaatggaggatgcaatttgaagagagatagacacaaaaaataaatagtgggtcctaccattaagtgagtcccaccatcatgaattatatttt 32915954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 375
Target Start/End: Original strand, 33608844 - 33608901
Alignment:
Q  318 ttctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaa 375  Q
    |||||||||| ||||||||||| |||| | |||||| |||||||||| ||||| ||||    
T  33608844 ttctccatttggtaaaataaatggagtttgcaatttggagagagataaacacaaaaaa 33608901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 381
Target Start/End: Original strand, 7712330 - 7712398
Alignment:
Q  313 agatcttctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaatagata 381  Q
    ||||| ||||||||||  ||||||||| ||  || |||||| |||||||||||| |||||| |||||||    
T  7712330 agatcctctccatttataaaaataaatggaagatgcaatttagagagagatagagacataagatagata 7712398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 313 - 381
Target Start/End: Original strand, 17828531 - 17828599
Alignment:
Q  313 agatcttctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaatagata 381  Q
    ||||| ||| ||||| ||| ||||| | |||||| |||||| |||||||||||||||||||||||||||    
T  17828531 agatcctctacatttggtataataattggagtatgcaatttggagagagatagacacataaaatagata 17828599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 347 - 434
Target Start/End: Original strand, 2800608 - 2800695
Alignment:
Q  347 acaattttgagagagatagacacataaaatagataatgaatccgattattatgtgagtctcaccatcattaattatcttttacctttt 434  Q
    ||||||| ||||||||||||||||||||||||||| || |||  |  |||| ||| ||| |||||||||| ||||| |||||| ||||    
T  2800608 acaatttggagagagatagacacataaaatagatagtggatcataccattaagtgggtcccaccatcattgattattttttacttttt 2800695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 381
Target Start/End: Original strand, 7215820 - 7215883
Alignment:
Q  319 tctccatttagtaaaataaataga-gtatacaattttgagagagatagacacataaaatagata 381  Q
    |||||||||  |||||||||| || ||  ||||||| |||||||||||||||||||||||||||    
T  7215820 tctccatttgataaaataaatggaagtgcacaatttggagagagatagacacataaaatagata 7215883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 370
Target Start/End: Complemental strand, 29229200 - 29229149
Alignment:
Q  319 tctccatttagtaaaataaatagagtatacaattttgagagagatagacaca 370  Q
    ||||||||| ||| ||||||| |||||| |||||| ||||||||||||||||    
T  29229200 tctccatttggtataataaatggagtatgcaatttggagagagatagacaca 29229149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 434
Target Start/End: Complemental strand, 4804561 - 4804439
Alignment:
Q  313 agatcttctccatttagtaaaataaatagagtat-acaattttgagagagatagacacataaaatagataatgaatccgattattatgtgagtctcacca 411  Q
    ||||| ||||||||| | ||||||||| |||| | |||| || |||||||||||||||| |||||||||  ||  ||| |  | || ||| ||| |||||    
T  4804561 agatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccacca 4804462  T
Q  412 tcattaattatcttttacctttt 434  Q
    ||||||||||| |||||| ||||    
T  4804461 tcattaattatattttacttttt 4804439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 313 - 380
Target Start/End: Original strand, 40695210 - 40695277
Alignment:
Q  313 agatcttctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaatagat 380  Q
    ||||||||||||||||| ||||||||| |||| |  || || |||||||||||||||| |||||||||    
T  40695210 agatcttctccatttagcaaaataaatggagtttggaagttggagagagatagacacaaaaaatagat 40695277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 381
Target Start/End: Complemental strand, 18689601 - 18689535
Alignment:
Q  315 atcttctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaatagata 381  Q
    |||||||| |||||| ||||||||| || ||| |||||| |||||||||| ||| ||||||||||||    
T  18689601 atcttctcgatttagcaaaataaatggaatatgcaatttggagagagataaacatataaaatagata 18689535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 430
Target Start/End: Original strand, 10672519 - 10672592
Alignment:
Q  357 gagagatagacacataaaatagataatgaatccgattattatgtgagtctcaccatcattaattatcttttacc 430  Q
    |||||||||||||| |||||||||  || |||| |  | || ||||||| |||||||||||||||| |||||||    
T  10672519 gagagatagacacaaaaaatagatggtggatcctaccactaagtgagtcccaccatcattaattatattttacc 10672592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 381
Target Start/End: Complemental strand, 39426317 - 39426254
Alignment:
Q  319 tctccatttagtaaaataaataga-gtatacaattttgagagagatagacacataaaatagata 381  Q
    |||||||||  |||||||||| || ||| ||||||| |||||||||||||||||||||||||||    
T  39426317 tctccatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 39426254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 422
Target Start/End: Original strand, 32887760 - 32887852
Alignment:
Q  330 taaaataaatagagtatacaattttgagagagatagacacataaaatagataatgaatccgattattatgtgagtctcaccatcattaattat 422  Q
    |||||||||| ||||| ||| ||| |||| |||||||||||||||||| ||| || |||| |  ||||  || ||| ||||||||||||||||    
T  32887760 taaaataaatggagtacacagtttagagaaagatagacacataaaataaatagtggatcctaccattaaatgggtcccaccatcattaattat 32887852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 381
Target Start/End: Original strand, 26860030 - 26860081
Alignment:
Q  330 taaaataaatagagtatacaattttgagagagatagacacataaaatagata 381  Q
    |||||||||| ||||| | |||||  ||||||||||||||||||||||||||    
T  26860030 taaaataaatggagtacataatttgaagagagatagacacataaaatagata 26860081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 422
Target Start/End: Original strand, 5047379 - 5047453
Alignment:
Q  348 caattttgagagagatagacacataaaatagataatgaatccgattattatgtgagtctcaccatcattaattat 422  Q
    |||||| ||||||||| ||  |||||||||||||||| |||| |  | |||||| ||| ||||||||||||||||    
T  5047379 caatttggagagagattgatgcataaaatagataatggatcctaccactatgtgggtcccaccatcattaattat 5047453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 380
Target Start/End: Complemental strand, 24977343 - 24977285
Alignment:
Q  322 ccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaatagat 380  Q
    |||||||| |||||||||   || |||||||| |||||||||||||||| |||||||||    
T  24977343 ccatttagcaaaataaatgatgtttacaatttagagagagatagacacaaaaaatagat 24977285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 375
Target Start/End: Original strand, 47296102 - 47296164
Alignment:
Q  313 agatcttctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaa 375  Q
    ||||| |||||||||| |||| |||||  |||||||||||| ||||||||| |||||| ||||    
T  47296102 agatcatctccatttattaaattaaatgaagtatacaatttggagagagatggacacaaaaaa 47296164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 418
Target Start/End: Original strand, 30210672 - 30210777
Alignment:
Q  313 agatcttctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaatagataatgaatccgattattatgtgagtctcaccat 412  Q
    ||||||||| ||||| |||||| |||| |||| |||| ||| |||||||||||||| | ||||| |||  ||| ||  |||||| |||| ||| || |||    
T  30210672 agatcttcttcatttggtaaaacaaatggagtttacagtttagagagagatagacaaaaaaaattgatggtgagtcatattattttgtgggtcccatcat 30210771  T
Q  413 cattaa 418  Q
    ||||||    
T  30210772 cattaa 30210777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 368
Target Start/End: Original strand, 49384631 - 49384680
Alignment:
Q  319 tctccatttagtaaaataaatagagtatacaattttgagagagatagaca 368  Q
    |||||||||  |||||||||| || |||||||||| ||||||||||||||    
T  49384631 tctccatttgttaaaataaatggaatatacaatttagagagagatagaca 49384680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 434
Target Start/End: Complemental strand, 26768926 - 26768886
Alignment:
Q  394 attatgtgagtctcaccatcattaattatcttttacctttt 434  Q
    |||| |||||||||||||||||||||||| |||||| ||||    
T  26768926 attaagtgagtctcaccatcattaattattttttacttttt 26768886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 421
Target Start/End: Complemental strand, 32618892 - 32618805
Alignment:
Q  333 aataaatagagtatacaattttgagagagatagacacataaaatagataatgaatccgattattatgtgagtctcaccatcattaatta 421  Q
    ||||||| |||||| |||||| ||||||||| |||| ||||| |||||| || |||| | ||||| ||  ||| |||||||||||||||    
T  32618892 aataaatggagtatccaatttggagagagatggacatataaa-tagatagtggatcctactattaagtaggtcccaccatcattaatta 32618805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 381
Target Start/End: Original strand, 35534752 - 35534813
Alignment:
Q  319 tctccatttagtaaaataaataga-gtatacaattttgagagagatagacacataaaatagata 381  Q
    |||||||||  |||||||||| || ||| |||||||  ||||||||||||||||||||||||||    
T  35534752 tctccatttgataaaataaatggaagtacacaattt--agagagatagacacataaaatagata 35534813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 381
Target Start/End: Complemental strand, 58790 - 58724
Alignment:
Q  315 atcttctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaatagata 381  Q
    |||||||| |||||| ||||||||| || ||| |||||| |||||||||| ||| ||||||||||||    
T  58790 atcttctcgatttagcaaaataaatggaatatgcaatttggagagagataaacatataaaatagata 58724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 299 - 387
Target Start/End: Original strand, 10423 - 10511
Alignment:
Q  299 tttcaaatgagtcgagatcttctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaatagataatgaat 387  Q
    ||||||| ||||  ||||| ||||||||||  ||||||||| ||| |||||||||  | ||| ||| ||||| ||||||||||||||||    
T  10423 tttcaaacgagttaagatcctctccatttatcaaaataaatggagaatacaatttaaaaagaaataaacacaaaaaatagataatgaat 10511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 434
Target Start/End: Original strand, 22405 - 22526
Alignment:
Q  313 agatcttctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaatagataatgaatccgattattatgtgagtctcaccat 412  Q
    ||||| ||| ||||||| ||||||||| |||| | ||||||  | ||||||||||||| |||||||||| || |||| |  | || ||||||  ||| ||    
T  22405 agatcctctgcatttagcaaaataaatggagtttgcaatttacaaagagatagacacaaaaaatagatagtggatcctaccactaagtgagttccacaat 22504  T
Q  413 cattaattatcttttacctttt 434  Q
     ||||||||| |||||| ||||    
T  22505 aattaattatattttacttttt 22526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 434
Target Start/End: Original strand, 29533 - 29653
Alignment:
Q  314 gatcttctccatttagtaaaataaatagagtatacaattttgagagagatagacacataaaatagataatgaatccgattattatgtgagtctcaccatc 413  Q
    |||| ||||||||||  ||||||||| ||  |  |||||| |||||||||||| ||||||||||| ||||   ||| |  |||| ||||||| ||| |||    
T  29533 gatcctctccatttataaaaataaatggaaaaagcaatttagagagagatagagacataaaataggtaataggtcctagcattacgtgagtcccactatc 29632  T
Q  414 attaattatcttttacctttt 434  Q
    ||||||||  |||||| ||||    
T  29633 attaattacattttacttttt 29653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University