View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14928_high_17 (Length: 248)
Name: NF14928_high_17
Description: NF14928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14928_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 20 - 246
Target Start/End: Original strand, 30901694 - 30901919
Alignment:
| Q |
20 |
catcctcatgagggatgagttaaactaaattgtgatgggacatgcaaagagaatggaaatcatgcgggaaagcggcgggcggcggtcttctttgggatag |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| || ||||||||||||| ||||||| |
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| T |
30901694 |
catcctcatgagggatgagttaaactaaattgtgatggggcatgcaaagagaatggaaatcatgcgggaa-gcggtggacggcggtcttcttcgggatag |
30901792 |
T |
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| Q |
120 |
taatggcaaatgactcaaagaatttgtgcgcaagattagagattgtgatgctctgcatgcaaattaaattggggtttatatatgggtttggagctagcct |
219 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
30901793 |
taatggcaaatgactcaaagaatttgtgtgcaagattggagattgtgatgctctgcatacaaattaaattggggtttatatctgggtttggagctagcct |
30901892 |
T |
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| Q |
220 |
agcgtgatggagtttcacatctctgtg |
246 |
Q |
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|||||||||||||||||||||||||| |
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| T |
30901893 |
ggcgtgatggagtttcacatctctgtg |
30901919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 245
Target Start/End: Original strand, 37752353 - 37752565
Alignment:
| Q |
22 |
tcctcatgagggatgagttaaactaaattgtgatgggacatgcaaagagaatggaaatcatgcgggaaagcggcgggcggcggtcttctttgggatagta |
121 |
Q |
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| T |
37752353 |
tcctcatgagggatg-gttaaactcaattatgatgggacgtgcaaatagaatggaaatcgtgtgggtt--------gtggcagtcttctttgggatacta |
37752443 |
T |
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| Q |
122 |
atggcaaatgactcaaagaatttgtgcgcaagattagagattgtgatgctctgcatgcaaattaaattggggtttatatatgggtttggagctagcctag |
221 |
Q |
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| T |
37752444 |
atggtagatggttcaaaagatttgtgcgcaagattggtgtttgtgatgctctacatgcaga--aatgtggggtttgtattttggtttagagctagcttgg |
37752541 |
T |
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| Q |
222 |
cgtgatggagtttcacatctctgt |
245 |
Q |
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||||||||| |||||||||||||| |
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| T |
37752542 |
cgtgatggaatttcacatctctgt |
37752565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 20 - 246
Target Start/End: Complemental strand, 41550436 - 41550220
Alignment:
| Q |
20 |
catcctcatgagggatgagttaaactaaattgtgatgggacatgcaaagagaatggaaatcatgcgggaaagcggcgggcggcggtcttctttgggatag |
119 |
Q |
| |
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|||||||| |||||||| |||||||| |||||||||||| ||||||||||||||||||||| |||||| | | |||||||||||| |||| | |
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| T |
41550436 |
catcctcaggagggatgggttaaactcaattgtgatggggcatgcaaagagaatggaaatcgtgcggg--------gtgtggcggtcttcttcgggacac |
41550345 |
T |
|
| Q |
120 |
taatggcaaatgactcaaagaatttgtgcgcaagattagagattgtgatgctctgcatgcaaattaaattggggtttatatatgggtttggagctagcct |
219 |
Q |
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||||| ||| || ||||||| |||||||||||| ||| ||| ||| ||||||||||||||| | || |||||||||||| | || ||||||||||| | |
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| T |
41550344 |
taatgacaagtggctcaaaggatttgtgcgcaaaattggagtttgcgatgctctgcatgcaga--aatgtggggtttatatttagggttggagctagctt |
41550247 |
T |
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| Q |
220 |
agcgtgatggagtttcacatctctgtg |
246 |
Q |
| |
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||| |||||||||||||||||||||| |
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| T |
41550246 |
ggcgggatggagtttcacatctctgtg |
41550220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 101 - 239
Target Start/End: Original strand, 36732650 - 36732786
Alignment:
| Q |
101 |
gcggtcttctttgggatagtaatggcaaatgactcaaagaatttgtgcgcaagattagagattgtgatgctctgcatgcaaattaaattggggtttatat |
200 |
Q |
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||||||||||| ||||| ||||| ||||| |||||| ||||||||||||||||| || ||||||||||||||||||| | || |||||| | ||| |
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| T |
36732650 |
gcggtcttcttcaggatactaatgataaatggctcaaataatttgtgcgcaagattgaagtttgtgatgctctgcatgcaga--aatgtggggtgtgtat |
36732747 |
T |
|
| Q |
201 |
atgggtttggagctagcctagcgtgatggagtttcacat |
239 |
Q |
| |
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|||||||||||||||| | |||||||||||||||||| |
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| T |
36732748 |
ttgggtttggagctagcatgacgtgatggagtttcacat |
36732786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 180
Target Start/End: Original strand, 6262024 - 6262089
Alignment:
| Q |
115 |
gatagtaatggcaaatgactcaaagaatttgtgcgcaagattagagattgtgatgctctgcatgca |
180 |
Q |
| |
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|||| ||||| |||||||||||| | |||||||||||||||| ||| | ||||||||||||||||| |
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| T |
6262024 |
gatactaatgacaaatgactcaagggatttgtgcgcaagattggagttcgtgatgctctgcatgca |
6262089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 6260983 - 6261037
Alignment:
| Q |
22 |
tcctcatgagggatgagttaaactaaattgtgatgggacatgcaaagagaatgga |
76 |
Q |
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|||||||||| |||| ||||||| |||||||||||| | ||||||||||||||| |
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| T |
6260983 |
tcctcatgagagatggattaaactcaattgtgatggggcgtgcaaagagaatgga |
6261037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 180
Target Start/End: Complemental strand, 29515455 - 29515304
Alignment:
| Q |
20 |
catcctcatgagggatgagttaaactaaattgtgatgggacatgcaaagagaatggaaatcatgcgggaaagcggcgggcggcggtcttctttgggatag |
119 |
Q |
| |
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|||||||| || ||||| ||||||| |||||||||||| | |||||||||||||||||||||| ||| | |||| |||||||| || | |
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| T |
29515455 |
catcctcaggaaggatggattaaactcaattgtgatggg-cgtgcaaagagaatggaaatcatgtggg--------gtgcggtggtcttctcctagacac |
29515365 |
T |
|
| Q |
120 |
taatggcaaatgactcaaagaatttgtgcgcaagattagagattgtgatgctctgcatgca |
180 |
Q |
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||||||||||| ||||||| ||||||| |||||||| ||| ||| ||||||||||||||| |
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| T |
29515364 |
taatggcaaattgctcaaaggatttgtgtgcaagattggagtttgcgatgctctgcatgca |
29515304 |
T |
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