View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14928_high_8 (Length: 359)

Name: NF14928_high_8
Description: NF14928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14928_high_8
NF14928_high_8
[»] chr5 (10 HSPs)
chr5 (19-329)||(4273431-4273741)
chr5 (202-271)||(20982251-20982321)
chr5 (202-237)||(23137366-23137401)
chr5 (203-303)||(11457008-11457111)
chr5 (202-271)||(26516182-26516252)
chr5 (206-239)||(36539158-36539191)
chr5 (202-251)||(37873971-37874020)
chr5 (202-230)||(1550812-1550840)
chr5 (202-230)||(7026411-7026439)
chr5 (205-237)||(32222901-32222933)
[»] chr6 (15 HSPs)
chr6 (69-152)||(10151245-10151328)
chr6 (202-251)||(4247220-4247270)
chr6 (240-317)||(10400192-10400273)
chr6 (202-237)||(7268050-7268085)
chr6 (203-237)||(4003751-4003785)
chr6 (283-325)||(29274287-29274329)
chr6 (202-236)||(31807978-31808012)
chr6 (259-316)||(1904762-1904818)
chr6 (259-316)||(1908995-1909051)
chr6 (202-270)||(3155060-3155129)
chr6 (202-231)||(14340960-14340989)
chr6 (202-324)||(2206474-2206601)
chr6 (205-237)||(8470124-8470156)
chr6 (283-327)||(22742336-22742380)
chr6 (202-230)||(34404322-34404350)
[»] chr8 (4 HSPs)
chr8 (206-271)||(43208249-43208315)
chr8 (283-327)||(45071172-45071216)
chr8 (200-229)||(3179652-3179681)
chr8 (205-237)||(6950223-6950255)
[»] chr4 (7 HSPs)
chr4 (70-152)||(41211373-41211455)
chr4 (202-251)||(33640992-33641042)
chr4 (202-270)||(46053584-46053653)
chr4 (202-230)||(6427918-6427946)
chr4 (202-238)||(8422987-8423023)
chr4 (203-231)||(40709537-40709565)
chr4 (208-251)||(55437420-55437464)
[»] chr7 (7 HSPs)
chr7 (202-317)||(49060424-49060544)
chr7 (283-322)||(23918927-23918966)
chr7 (283-330)||(48157173-48157220)
chr7 (202-230)||(657842-657870)
chr7 (283-327)||(28165061-28165105)
chr7 (202-238)||(28691964-28692000)
chr7 (202-230)||(39539904-39539932)
[»] scaffold0426 (1 HSPs)
scaffold0426 (202-237)||(4027-4062)
[»] chr3 (6 HSPs)
chr3 (202-237)||(21574376-21574411)
chr3 (202-237)||(37308216-37308251)
chr3 (206-254)||(23785141-23785190)
chr3 (202-231)||(34857395-34857424)
chr3 (240-296)||(659910-659965)
chr3 (202-238)||(44240047-44240083)
[»] chr2 (4 HSPs)
chr2 (283-326)||(7103540-7103583)
chr2 (201-271)||(10198594-10198665)
chr2 (202-238)||(5752750-5752786)
chr2 (200-232)||(5826142-5826174)
[»] chr1 (4 HSPs)
chr1 (202-232)||(16322726-16322756)
chr1 (283-325)||(27738238-27738280)
chr1 (283-325)||(34179930-34179972)
chr1 (203-237)||(44936741-44936775)


Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 329
Target Start/End: Complemental strand, 4273741 - 4273431
Alignment:
Q  19 tcattggcattcatagggatgttcctgcccctgatatgggaactaattcacagacaatggcttggattcttgatgaatattcaaagtttcatggtcattc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4273741 tcattggcattcatagggatgttcctgcccctgatatgggaactaattcacagacaatggcttggattcttgatgaatattcaaagtttcatggtcattc 4273642  T
Q  119 accagcagttgtgactggcaagcctattgtaagtgtataataatatttcataatcactgccaactgtagttttaggccctaagttggataaacaacttaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4273641 accagcagttgtgactggcaagcctattgtaagtgtataataatatttcataatcactgccaactgtagttttaggccctaagttggataaacaacttaa 4273542  T
Q  219 ttaagtgcttatagtataattcttatcatataaatagttctgtataagctattaacgaaagataaaaataaagtcaaattgttttaaaataagctataat 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4273541 ttaagtgcttatagtataattcttatcatataaatagttctgtataagctattaacgaaagataaaaataaagtcaaattgttttaaaataagctataat 4273442  T
Q  319 ctgtttttaca 329  Q
    |||||||||||    
T  4273441 ctgtttttaca 4273431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 271
Target Start/End: Complemental strand, 20982321 - 20982251
Alignment:
Q  202 ttggataaacaacttaattaagtgcttatagtataa-ttcttatcatataaatagttctgtataagctatt 271  Q
    ||||||||||||||| ||||||||||||||| |||| | |||||||||||| |  || |||||||||||||    
T  20982321 ttggataaacaacttcattaagtgcttatagcataagtgcttatcatataagtgcttatgtataagctatt 20982251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 237
Target Start/End: Original strand, 23137366 - 23137401
Alignment:
Q  202 ttggataaacaacttaattaagtgcttatagtataa 237  Q
    ||||||||||||||||||| ||||||||||||||||    
T  23137366 ttggataaacaacttaattgagtgcttatagtataa 23137401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 303
Target Start/End: Original strand, 11457008 - 11457111
Alignment:
Q  203 tggataaacaacttaattaagtgcttatagtataatt-cttatcatataaatagttctgtataagctat---taacgaaagataaaaataaagtcaaatt 298  Q
    |||||||||| |||||| ||| |||||||| |||| | ||||||||| ||||  || |||||||||| |   |||||||||||| || ||||||||||||    
T  11457008 tggataaacagcttaatcaagcgcttatagcataagtgcttatcatacaaatgtttatgtataagctttctataacgaaagatataa-taaagtcaaatt 11457106  T
Q  299 gtttt 303  Q
    |||||    
T  11457107 gtttt 11457111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 271
Target Start/End: Original strand, 26516182 - 26516252
Alignment:
Q  202 ttggataaacaacttaattaagtgcttatagtataa-ttcttatcatataaatagttctgtataagctatt 271  Q
    |||||||||||||||||||||| |||||||| ||||   |||||||||||| |  || |||||||||||||    
T  26516182 ttggataaacaacttaattaagcgcttatagcataagcgcttatcatataagtgcttatgtataagctatt 26516252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 239
Target Start/End: Original strand, 36539158 - 36539191
Alignment:
Q  206 ataaacaacttaattaagtgcttatagtataatt 239  Q
    |||||| |||||||||||||||||||||||||||    
T  36539158 ataaactacttaattaagtgcttatagtataatt 36539191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 37874020 - 37873971
Alignment:
Q  202 ttggataaacaacttaattaagtgcttatagtataattcttatcatataa 251  Q
    |||||||||| |||||||||||||||||||| || || ||||||| ||||    
T  37874020 ttggataaaccacttaattaagtgcttatagcatgatccttatcacataa 37873971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 230
Target Start/End: Original strand, 1550812 - 1550840
Alignment:
Q  202 ttggataaacaacttaattaagtgcttat 230  Q
    |||||||||||||||||||||||||||||    
T  1550812 ttggataaacaacttaattaagtgcttat 1550840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 230
Target Start/End: Complemental strand, 7026439 - 7026411
Alignment:
Q  202 ttggataaacaacttaattaagtgcttat 230  Q
    |||||||||||||||||||||||||||||    
T  7026439 ttggataaacaacttaattaagtgcttat 7026411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 32222901 - 32222933
Alignment:
Q  205 gataaacaacttaattaagtgcttatagtataa 237  Q
    |||||||| ||||||||||||||||||||||||    
T  32222901 gataaacagcttaattaagtgcttatagtataa 32222933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 152
Target Start/End: Original strand, 10151245 - 10151328
Alignment:
Q  69 cagacaatggcttggattcttgatgaatattcaaagtttcatggtcattcaccagcagttgtgactggcaagcctattgtaagt 152  Q
    ||||||||||| ||||| || ||||| |||||||| |||||||||||||| || ||||| |||||||| || ||||| ||||||    
T  10151245 cagacaatggcatggatactagatgagtattcaaaatttcatggtcattctcctgcagtagtgactggaaaacctatagtaagt 10151328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 4247270 - 4247220
Alignment:
Q  202 ttggataaacaacttaattaagtgcttatagtataa-ttcttatcatataa 251  Q
    ||||||||||||||||||||||||||||||| |||| | ||||||||||||    
T  4247270 ttggataaacaacttaattaagtgcttatagcataagtacttatcatataa 4247220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 317
Target Start/End: Original strand, 10400192 - 10400273
Alignment:
Q  240 cttatcatataaatagttctgtataagctatt----aacgaaagataaaaataaagtcaaattgttttaaaataagctataa 317  Q
    ||||||||||||||  || |||||||||||||    ||  |||||||||||||||||||||||||| | | |||||||||||    
T  10400192 cttatcatataaatgtttatgtataagctattttataataaaagataaaaataaagtcaaattgttatcatataagctataa 10400273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 237
Target Start/End: Complemental strand, 7268085 - 7268050
Alignment:
Q  202 ttggataaacaacttaattaagtgcttatagtataa 237  Q
    |||||||||||||||||||||||| |||||||||||    
T  7268085 ttggataaacaacttaattaagtgtttatagtataa 7268050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 237
Target Start/End: Complemental strand, 4003785 - 4003751
Alignment:
Q  203 tggataaacaacttaattaagtgcttatagtataa 237  Q
    |||||||||||||||||||||||||||||| ||||    
T  4003785 tggataaacaacttaattaagtgcttatagcataa 4003751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 325
Target Start/End: Complemental strand, 29274329 - 29274287
Alignment:
Q  283 aaaataaagtcaaattgttttaaaataagctataatctgtttt 325  Q
    ||||||||||||||||||||| | ||||||||||| |||||||    
T  29274329 aaaataaagtcaaattgttttcatataagctataaactgtttt 29274287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 236
Target Start/End: Complemental strand, 31808012 - 31807978
Alignment:
Q  202 ttggataaacaacttaattaagtgcttatagtata 236  Q
    ||||||||||||||||||||||||||||| |||||    
T  31808012 ttggataaacaacttaattaagtgcttatggtata 31807978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 316
Target Start/End: Original strand, 1904762 - 1904818
Alignment:
Q  259 tgtataagctattaacgaaagataaaaataaagtcaaattgttttaaaataagctata 316  Q
    |||||||||||||||| ||| |||||| |||||||||||| |||| | ||||||||||    
T  1904762 tgtataagctattaactaaatataaaa-taaagtcaaattatttttatataagctata 1904818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 316
Target Start/End: Original strand, 1908995 - 1909051
Alignment:
Q  259 tgtataagctattaacgaaagataaaaataaagtcaaattgttttaaaataagctata 316  Q
    |||||||||||||||| ||| |||||| |||||||||||| |||| | ||||||||||    
T  1908995 tgtataagctattaactaaatataaaa-taaagtcaaattatttttatataagctata 1909051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 270
Target Start/End: Original strand, 3155060 - 3155129
Alignment:
Q  202 ttggataaacaacttaattaagtgcttatagtataa-ttcttatcatataaatagttctgtataagctat 270  Q
    |||||||||||||||| ||||| |||||||| ||||    ||||||||||||| ||| ||||||||||||    
T  3155060 ttggataaacaacttatttaagcgcttatagcataagcgtttatcatataaatggttatgtataagctat 3155129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 231
Target Start/End: Complemental strand, 14340989 - 14340960
Alignment:
Q  202 ttggataaacaacttaattaagtgcttata 231  Q
    ||||||||||||||||||||||||||||||    
T  14340989 ttggataaacaacttaattaagtgcttata 14340960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 324
Target Start/End: Original strand, 2206474 - 2206601
Alignment:
Q  202 ttggataaacaacttaattaagtgcttatagtataa-ttcttatcatataaatagttctgtataagctat-----taacgaaagataaaaataaagtcaa 295  Q
    ||||||||||  ||||||||||||||||||| ||||  ||||||| |||||  | ||||||||||| |||     |||| |||||| ||||||||||  |    
T  2206474 ttggataaacttcttaattaagtgcttatagcataagctcttatcgtataagcatttctgtataagttatttttataacaaaagat-aaaataaagtata 2206572  T
Q  296 attgttttaaaataagctataatctgttt 324  Q
    |||||||| | ||||||||| | ||||||    
T  2206573 attgtttttatataagctatgaactgttt 2206601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 8470156 - 8470124
Alignment:
Q  205 gataaacaacttaattaagtgcttatagtataa 237  Q
    |||||||||||||||||||||||||| ||||||    
T  8470156 gataaacaacttaattaagtgcttatcgtataa 8470124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 327
Target Start/End: Original strand, 22742336 - 22742380
Alignment:
Q  283 aaaataaagtcaaattgttttaaaataagctataatctgttttta 327  Q
    ||||||||||||||||||||| | ||||||||||| || ||||||    
T  22742336 aaaataaagtcaaattgttttcatataagctataagctattttta 22742380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 230
Target Start/End: Original strand, 34404322 - 34404350
Alignment:
Q  202 ttggataaacaacttaattaagtgcttat 230  Q
    |||||||||||||||||||||||||||||    
T  34404322 ttggataaacaacttaattaagtgcttat 34404350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 271
Target Start/End: Complemental strand, 43208315 - 43208249
Alignment:
Q  206 ataaacaacttaattaagtgcttatagtataattctt-atcatataaatagttctgtataagctatt 271  Q
    ||||||||||||||||||||||||||||||||   || ||||||||| || || |||||||||||||    
T  43208315 ataaacaacttaattaagtgcttatagtataaacgttcatcatataagtatttatgtataagctatt 43208249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 327
Target Start/End: Original strand, 45071172 - 45071216
Alignment:
Q  283 aaaataaagtcaaattgttttaaaataagctataatctgttttta 327  Q
    ||||||||||||||||||||| | ||||||||||| |||||||||    
T  45071172 aaaataaagtcaaattgtttttatataagctataagctgttttta 45071216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 3179652 - 3179681
Alignment:
Q  200 agttggataaacaacttaattaagtgctta 229  Q
    ||||||||||||||||||||||||||||||    
T  3179652 agttggataaacaacttaattaagtgctta 3179681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 6950223 - 6950255
Alignment:
Q  205 gataaacaacttaattaagtgcttatagtataa 237  Q
    |||||||||||||||||||||||||||| ||||    
T  6950223 gataaacaacttaattaagtgcttatagcataa 6950255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 152
Target Start/End: Original strand, 41211373 - 41211455
Alignment:
Q  70 agacaatggcttggattcttgatgaatattcaaagtttcatggtcattcaccagcagttgtgactggcaagcctattgtaagt 152  Q
    |||| ||||| |||||||| ||||| ||||| || |||||||| ||||| || || |||||||| || |||||||||||||||    
T  41211373 agaccatggcatggattctagatgagtattctaaatttcatggacattcgcctgctgttgtgaccggaaagcctattgtaagt 41211455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 33640992 - 33641042
Alignment:
Q  202 ttggataaacaacttaattaagtgcttatagtataat-tcttatcatataa 251  Q
    ||||||||||| ||||||||||||||||||| |||||  ||||||||||||    
T  33640992 ttggataaacagcttaattaagtgcttatagaataatcgcttatcatataa 33641042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 270
Target Start/End: Original strand, 46053584 - 46053653
Alignment:
Q  202 ttggataaacaacttaattaagtgcttatagtat-aattcttatcatataaatagttctgtataagctat 270  Q
    ||||||||||| |||||||||| |||||||| || | | |||||||||||| || || ||||||||||||    
T  46053584 ttggataaacagcttaattaagcgcttatagcatgagtacttatcatataagtacttatgtataagctat 46053653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 230
Target Start/End: Original strand, 6427918 - 6427946
Alignment:
Q  202 ttggataaacaacttaattaagtgcttat 230  Q
    |||||||||||||||||||||||||||||    
T  6427918 ttggataaacaacttaattaagtgcttat 6427946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 8423023 - 8422987
Alignment:
Q  202 ttggataaacaacttaattaagtgcttatagtataat 238  Q
    |||||||||||||||||||||||| |||||| |||||    
T  8423023 ttggataaacaacttaattaagtgtttatagcataat 8422987  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 231
Target Start/End: Complemental strand, 40709565 - 40709537
Alignment:
Q  203 tggataaacaacttaattaagtgcttata 231  Q
    |||||||||||||||||||||||||||||    
T  40709565 tggataaacaacttaattaagtgcttata 40709537  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 251
Target Start/End: Complemental strand, 55437464 - 55437420
Alignment:
Q  208 aaacaacttaattaagtgcttatagtataatt-cttatcatataa 251  Q
    ||||||||||||||| ||||||||||||||||  |||||||||||    
T  55437464 aaacaacttaattaaatgcttatagtataattggttatcatataa 55437420  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 317
Target Start/End: Original strand, 49060424 - 49060544
Alignment:
Q  202 ttggataaacaacttaattaagtgcttatagtataat-tcttatcatataaatagttctgtataagctat-----taacgaaagataaaaataaagtcaa 295  Q
    |||| |||||| ||||||||||  |||||||||||||  |||||||||||| || || ||||||||||||     |||| ||| || |||||||||||||    
T  49060424 ttgggtaaacagcttaattaagcacttatagtataatggcttatcatataagtatttatgtataagctatttctataacaaaaaat-aaaataaagtcaa 49060522  T
Q  296 attgttttaaaataagctataa 317  Q
    ||| |||| | |||||||||||    
T  49060523 attatttttatataagctataa 49060544  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 322
Target Start/End: Original strand, 23918927 - 23918966
Alignment:
Q  283 aaaataaagtcaaattgttttaaaataagctataatctgt 322  Q
    ||||||||||||||||||||| | ||||||||||||||||    
T  23918927 aaaataaagtcaaattgttttcatataagctataatctgt 23918966  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 330
Target Start/End: Complemental strand, 48157220 - 48157173
Alignment:
Q  283 aaaataaagtcaaattgttttaaaataagctataatctgtttttacaa 330  Q
    |||||||||| |||||||||||| |||||||||||| |||||| ||||    
T  48157220 aaaataaagtgaaattgttttaatataagctataatttgttttcacaa 48157173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 230
Target Start/End: Complemental strand, 657870 - 657842
Alignment:
Q  202 ttggataaacaacttaattaagtgcttat 230  Q
    |||||||||||||||||||||||||||||    
T  657870 ttggataaacaacttaattaagtgcttat 657842  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 327
Target Start/End: Original strand, 28165061 - 28165105
Alignment:
Q  283 aaaataaagtcaaattgttttaaaataagctataatctgttttta 327  Q
    ||||| ||||||||||||||||| ||||||||||| |||| ||||    
T  28165061 aaaatgaagtcaaattgttttaatataagctataaactgtcttta 28165105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 28692000 - 28691964
Alignment:
Q  202 ttggataaacaacttaattaagtgcttatagtataat 238  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  28692000 ttggataaacaacttaattaagtgtttataatataat 28691964  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 230
Target Start/End: Complemental strand, 39539932 - 39539904
Alignment:
Q  202 ttggataaacaacttaattaagtgcttat 230  Q
    |||||||||||||||||||||||||||||    
T  39539932 ttggataaacaacttaattaagtgcttat 39539904  T

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Target: scaffold0426 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 237
Target Start/End: Original strand, 4027 - 4062
Alignment:
Q  202 ttggataaacaacttaattaagtgcttatagtataa 237  Q
    ||||||||||||||||||| ||||||||||||||||    
T  4027 ttggataaacaacttaattgagtgcttatagtataa 4062  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 237
Target Start/End: Original strand, 21574376 - 21574411
Alignment:
Q  202 ttggataaacaacttaattaagtgcttatagtataa 237  Q
    |||||||||| |||||||||||||||||||||||||    
T  21574376 ttggataaactacttaattaagtgcttatagtataa 21574411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 237
Target Start/End: Complemental strand, 37308251 - 37308216
Alignment:
Q  202 ttggataaacaacttaattaagtgcttatagtataa 237  Q
    ||||||||||||||||||||||||||||||| ||||    
T  37308251 ttggataaacaacttaattaagtgcttatagcataa 37308216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 23785141 - 23785190
Alignment:
Q  206 ataaacaacttaattaagtgcttatagtat-aattcttatcatataaata 254  Q
    ||||||||||||||||||||||||||| || |||  ||||||||||||||    
T  23785141 ataaacaacttaattaagtgcttatagcataaatgtttatcatataaata 23785190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 231
Target Start/End: Original strand, 34857395 - 34857424
Alignment:
Q  202 ttggataaacaacttaattaagtgcttata 231  Q
    ||||||||||||||||||||||||||||||    
T  34857395 ttggataaacaacttaattaagtgcttata 34857424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 296
Target Start/End: Complemental strand, 659965 - 659910
Alignment:
Q  240 cttatcatataaatagttctgtataagctattaacgaaagataaaaataaagtcaaa 296  Q
    ||||||||||||||  || | |||||||||||||| |||||| ||||||||||||||    
T  659965 cttatcatataaatgcttatatataagctattaacaaaagat-aaaataaagtcaaa 659910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 44240047 - 44240083
Alignment:
Q  202 ttggataaacaacttaattaagtgcttatagtataat 238  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  44240047 ttggataaacaacttaagtaagtgcttatagcataat 44240083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 326
Target Start/End: Complemental strand, 7103583 - 7103540
Alignment:
Q  283 aaaataaagtcaaattgttttaaaataagctataatctgttttt 326  Q
    |||||||||||||| |||||||| ||||||||||| ||||||||    
T  7103583 aaaataaagtcaaactgttttaatataagctataagctgttttt 7103540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 271
Target Start/End: Complemental strand, 10198665 - 10198594
Alignment:
Q  201 gttggataaacaacttaattaagtgcttatagtat-aattcttatcatataaatagttctgtataagctatt 271  Q
    ||||||| ||||||||||||| |||||||||| || | | |||||||||||| || || |||||||||||||    
T  10198665 gttggattaacaacttaattaggtgcttatagcatgagtgcttatcatataagtacttttgtataagctatt 10198594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 5752786 - 5752750
Alignment:
Q  202 ttggataaacaacttaattaagtgcttatagtataat 238  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  5752786 ttggataaacaacttaattaactgcttatagcataat 5752750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 232
Target Start/End: Original strand, 5826142 - 5826174
Alignment:
Q  200 agttggataaacaacttaattaagtgcttatag 232  Q
    |||||||||||||||||||||||| ||||||||    
T  5826142 agttggataaacaacttaattaagagcttatag 5826174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 232
Target Start/End: Original strand, 16322726 - 16322756
Alignment:
Q  202 ttggataaacaacttaattaagtgcttatag 232  Q
    |||||||||||||||||||||||||||||||    
T  16322726 ttggataaacaacttaattaagtgcttatag 16322756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 325
Target Start/End: Complemental strand, 27738280 - 27738238
Alignment:
Q  283 aaaataaagtcaaattgttttaaaataagctataatctgtttt 325  Q
    ||||||||||||||||||||| | |||||||||||| ||||||    
T  27738280 aaaataaagtcaaattgttttcatataagctataatttgtttt 27738238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 325
Target Start/End: Complemental strand, 34179972 - 34179930
Alignment:
Q  283 aaaataaagtcaaattgttttaaaataagctataatctgtttt 325  Q
    |||||||||||||||||||||||  |||||||||| |||||||    
T  34179972 aaaataaagtcaaattgttttaatctaagctataaactgtttt 34179930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 237
Target Start/End: Complemental strand, 44936775 - 44936741
Alignment:
Q  203 tggataaacaacttaattaagtgcttatagtataa 237  Q
    |||||||||||||||||||| ||||||||||||||    
T  44936775 tggataaacaacttaattaaatgcttatagtataa 44936741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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