View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14928_low_11 (Length: 303)
Name: NF14928_low_11
Description: NF14928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14928_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 76 - 281
Target Start/End: Complemental strand, 8162117 - 8161908
Alignment:
| Q |
76 |
ttaaagggaagtcaataatggaatgcattgttgctaataatgtggtgg----tatgaacctgataagcagaagaaccgattccaaagagaaaatcagaag |
171 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8162117 |
ttaaagggaagtcgataatggaatgcattgttgctaataatgtggtggccggtatgaacctggtaagcagaagaaccgattccaaagagaaaatcagaag |
8162018 |
T |
|
| Q |
172 |
gaaaaagggtcctgttgaatgaagcagcatagtgacttggatgcacatgttgtgatgcagttccagtgacaacagcaaaaagtgtagccagagagaaaag |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
8162017 |
gaaaaagggtcctgttgaatgaagcagcatagtgacttggatgcacatgttgtgatgcagttccagtgacaacagccaaaagtgtagccagagaaaaaag |
8161918 |
T |
|
| Q |
272 |
atagaggagg |
281 |
Q |
| |
|
|||||||||| |
|
|
| T |
8161917 |
atagaggagg |
8161908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 115 - 285
Target Start/End: Complemental strand, 8137414 - 8137247
Alignment:
| Q |
115 |
atgtggtggtatgaacctgataagcagaagaaccgattccaaagagaaaatcagaaggaaaaagggtcctgttgaatgaagcagcatagtgacttggatg |
214 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||| |||| |||||||||||| || |||||||| | |
|
|
| T |
8137414 |
atgtgatggtatgaacctggtaagcagaagaaccaattccaaagagaaaatcatcaggaaaaaggctcctattgaatgaagca---tattgacttggttc |
8137318 |
T |
|
| Q |
215 |
cacatgttgtgatgcagttccagtgacaacagcaaaaagtgtagccagagagaaaagatagaggagggaag |
285 |
Q |
| |
|
|| | || || | ||||||||||||||||||| ||||| ||||| ||||| ||||||||||| ||||||| |
|
|
| T |
8137317 |
tactttttttggttcagttccagtgacaacagccaaaagggtagctagagaaaaaagatagagaagggaag |
8137247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 8162228 - 8162167
Alignment:
| Q |
14 |
aatatgacagaaaactcatacttcgcataggacacttaaaatctcagggacaatcttgataa |
75 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8162228 |
aatatgacagaaaattcatacttcgcataggacacttaaaatctcagggacaatcttgataa |
8162167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University