View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14928_low_13 (Length: 286)
Name: NF14928_low_13
Description: NF14928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14928_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 11 - 268
Target Start/End: Original strand, 26658748 - 26659009
Alignment:
| Q |
11 |
cagagactattataacaatgttttgcatatttaataaacaaacagactatttattcaga--gaattttgttgttacttcacatgctcttcacaactatag |
108 |
Q |
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| T |
26658748 |
cagagactattataacaatgttttgcatatttaataaacaaacagactatttattcagaatgacttttgttgttacttcacatgctcttcacaactatag |
26658847 |
T |
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| Q |
109 |
ttgataatggtcaaagtataggatttagacatcccct--nnnnnnnntattcctaaaaaagaagtatttagacatacatatattgtataaatctannnnn |
206 |
Q |
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| T |
26658848 |
ttgataatggtcaaagtataggatttagacatcccctagaaaaaaggtattcctaaaaaaaaagtatttaggcatacatatattgtataaatctattttt |
26658947 |
T |
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| Q |
207 |
nnngaagaagtatatagtataaatctatatgtggtcaaaataacatgtagaggttaagctat |
268 |
Q |
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| T |
26658948 |
tttgaagaagtatatagtataaatatatatgtggtcaaaataacatgtagagattaagctat |
26659009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 26644882 - 26644922
Alignment:
| Q |
12 |
agagactattataacaatgttttgcatatttaataaacaaa |
52 |
Q |
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| T |
26644882 |
agagactattataacaatgttttgcttattcaataaccaaa |
26644922 |
T |
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