View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14928_low_15 (Length: 281)

Name: NF14928_low_15
Description: NF14928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14928_low_15
NF14928_low_15
[»] chr4 (1 HSPs)
chr4 (169-260)||(1587369-1587460)
[»] chr7 (2 HSPs)
chr7 (149-236)||(47456198-47456285)
chr7 (192-260)||(6173315-6173382)
[»] chr1 (1 HSPs)
chr1 (149-236)||(46111310-46111397)
[»] chr8 (1 HSPs)
chr8 (169-260)||(30787440-30787530)
[»] chr5 (1 HSPs)
chr5 (169-231)||(324262-324324)


Alignment Details
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 169 - 260
Target Start/End: Complemental strand, 1587460 - 1587369
Alignment:
Q  169 atgaaaatgataggaagaagatgaaggtagaatttgaaaaatatcaaagggtccactttctttaaaaatgatcaaacggttaaggttaacaa 260  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  1587460 atgaaaatgataggaagaagatgaaggtagaaattgaaaaagatcaaagggtccactttctttaaaaaagatcaaacggttaagattaacaa 1587369  T

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Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 47456198 - 47456285
Alignment:
Q  149 gatgaatgtcaacgattataatgaaaatgataggaagaagatgaaggtagaatttgaaaaatatcaaagggtccactttctttaaaaa 236  Q
    |||||||||||||||| |  |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  47456198 gatgaatgtcaacgatgaagatgaaaatgataggaagaagatgaaggtagaaattgaaaaagatcaaagggtccactttctttaaaaa 47456285  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 6173315 - 6173382
Alignment:
Q  192 aaggtagaatttgaaaaatatcaaagggtccactttctttaaaaatgatcaaacggttaaggttaacaa 260  Q
    ||||||||| |||||| | ||||||||||||||||||||||||||  ||||||| |||||| |||||||    
T  6173315 aaggtagaaattgaaatagatcaaagggtccactttctttaaaaa-aatcaaacagttaagattaacaa 6173382  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 46111310 - 46111397
Alignment:
Q  149 gatgaatgtcaacgattataatgaaaatgataggaagaagatgaaggtagaatttgaaaaatatcaaagggtccactttctttaaaaa 236  Q
    ||||||||||| |||| |  |||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||| ||||    
T  46111310 gatgaatgtcagcgatgaagatgaaaatgataggaagaagatgaaggtagaaattgaaaaagatcaaaggatccactttcttttaaaa 46111397  T

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Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 169 - 260
Target Start/End: Original strand, 30787440 - 30787530
Alignment:
Q  169 atgaaaatgataggaagaagatgaaggtagaatttgaaaaatatcaaagggtccactttctttaaaaatgatcaaacggttaaggttaacaa 260  Q
    |||||||||  ||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||  |||||| ||||||| |||||||    
T  30787440 atgaaaatgtgaggaagatgatgaaggtagaaattgaaaaagatcaaagggtccactttctttaaaaa-aatcaaatggttaagattaacaa 30787530  T

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Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 169 - 231
Target Start/End: Complemental strand, 324324 - 324262
Alignment:
Q  169 atgaaaatgataggaagaagatgaaggtagaatttgaaaaatatcaaagggtccactttcttt 231  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||| | ||||||||    
T  324324 atgaaaatgataggaagaagatgaaggtagaaattgaaaaagatcaaagggttcgctttcttt 324262  T

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