View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14928_low_18 (Length: 252)
Name: NF14928_low_18
Description: NF14928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14928_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 40318133 - 40317884
Alignment:
| Q |
1 |
tgatatccatttataatgtgtgtatatagtactatatgtcccaattattaagccaaaaattagaaggggtataggtaagttgtataagtcaaagcctctt |
100 |
Q |
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| T |
40318133 |
tgatattcatttataatgtgtgtatatagtactatatgtcccaattattaagccaaaaattagaaggggtataggtaagttgtataagtcaaagcctctt |
40318034 |
T |
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| Q |
101 |
ctagctctgttggcattgtatgtgattttacgaaagccgttattgtgatcaattgatgaataataaacaatttatttgtgtttttaggtaaataaataat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40318033 |
ctagctctgttggcattgtatgtgattttacgaaagccattattgtgatcaattgatgaataataaacaatttatttgtgtttttaggtaaataaataat |
40317934 |
T |
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| Q |
201 |
ttactgtaatatagcaagtatcaatgtatatgaaataaagttttcctatg |
250 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
40317933 |
ttactgtaatatagcaagtatcaatatatatggaataaagttttcctatg |
40317884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 40328207 - 40327958
Alignment:
| Q |
1 |
tgatatccatttataatgtgtgtatatagtactatatgtcccaattattaagccaaaaattagaaggggtataggtaagttgtataagtcaaagcctctt |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40328207 |
tgatattcatttataatgtgtgtatatagtactatatgtcccaattattaagccaaaaattagaaggggtataggtaagttgtataagtcaaagcctctt |
40328108 |
T |
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| Q |
101 |
ctagctctgttggcattgtatgtgattttacgaaagccgttattgtgatcaattgatgaataataaacaatttatttgtgtttttaggtaaataaataat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40328107 |
ctagctctgttggcattgtatgtgattttacgaaagccattattgtgatcaattgatgaataataaacaatttatttgtgtttttaggtaaataaataat |
40328008 |
T |
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| Q |
201 |
ttactgtaatatagcaagtatcaatgtatatgaaataaagttttcctatg |
250 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
40328007 |
ttactgtaatatagcaagtatcaatatatatggaataaagttttcctatg |
40327958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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