View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14928_low_2 (Length: 690)
Name: NF14928_low_2
Description: NF14928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14928_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 455; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 17 - 546
Target Start/End: Original strand, 37493591 - 37494118
Alignment:
| Q |
17 |
caagcggaaacaaagaaactagagtagagtatgttgattgaaacatcatccgtaccggatacattctattattgttgttgtgcttcatttggaagcagca |
116 |
Q |
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| T |
37493591 |
caagcggaaacaaagaaactagagtagagtatgttgattgaaacatcatccgtaccggatacattctattattgttgttgtgcttcatttggaagcagca |
37493690 |
T |
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| Q |
117 |
ttgtgtttatacttcatgagttggccatttttcatgccctcactgcaggccatggaatgctgacccttttcaaaataaactgcacttgtgtaaggcatta |
216 |
Q |
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| T |
37493691 |
ttgtgtttatacttcatgagttggccatttttcgcgccctcactgcaggccatggaatgctgacccttttcaaaataaactgcacttgtgtaaggcatta |
37493790 |
T |
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| Q |
217 |
acacaaataagttaaattaataaccccatttcaaccaaggctgacatgcaaatcacccattttaattttccttcaaacaaaagacaatttggttatgtaa |
316 |
Q |
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| T |
37493791 |
acacaaataagttaaattaataaccccatttcaaccaaggctgacatgcaaatcacccattttaattttccttcaaacaaaagacaatttggttatgtaa |
37493890 |
T |
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| Q |
317 |
ttttcatccatgtgcaaatgtacactg--nnnnnnnatcctatttccagagaaacattgtgattcttagtcattttacttctgtcgaaattgttacctca |
414 |
Q |
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| T |
37493891 |
ttttcatccatgtgcaaatgtacactggttttttttattcaatttccagagaaacattgtgattcttagtcattctacttctgtcgaaattgttacctca |
37493990 |
T |
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| Q |
415 |
cttttctggtctccatccataactgctgcgttgtgctgtgtcaaattgtcgaagtttaatgcagtttaaattccaattggcacgcactggtcttcttttg |
514 |
Q |
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| T |
37493991 |
cttttctggtctccatccataactgctgcgttgtgccgtgtcaaattgtcgaagtttaatgcagtttgaattccaattg----gcactggtcttcttttg |
37494086 |
T |
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| Q |
515 |
tcattcggtctcgagccgtgtttgcagaagta |
546 |
Q |
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| T |
37494087 |
tcattcggtctcgagccgtgtttgcagaagta |
37494118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 594 - 680
Target Start/End: Original strand, 37494172 - 37494258
Alignment:
| Q |
594 |
ctgttcagtacaatttctaggctgtcaattggaagttattagcctgttgaatttattttggcattttatttatatgttcatctcact |
680 |
Q |
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| T |
37494172 |
ctgttcagcacaatttctaggctgtcgattggaagttattagcctgttgaatttattttggcattttatttatatgttcatctcact |
37494258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 37495067 - 37495171
Alignment:
| Q |
15 |
atcaagcggaaacaaagaaactagagtagagtatgttgattgaaacatcatccgtaccggatacattctattattgttgttgtgcttcatttggaagcag |
114 |
Q |
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| T |
37495067 |
atcaagcggaaacaaagaaacttcactagagtatgttgatagaaacatcat---tac--gatacattctattattgttgttgcgcatcatttggaagctg |
37495161 |
T |
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| Q |
115 |
cattgtgttt |
124 |
Q |
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| T |
37495162 |
cattgtgttt |
37495171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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