View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14928_low_21 (Length: 238)
Name: NF14928_low_21
Description: NF14928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14928_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 40328265 - 40328478
Alignment:
| Q |
11 |
tgaattaatgtttataaatatatgtatagtttggttttggacatttaaatgcctgaaagacactcatgtggggtcattgggtaccttgatttatcttgac |
110 |
Q |
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| T |
40328265 |
tgaattaatgtttataaatatatgtatagtttggttttggacatttaaatgcctgaaagacactcatgtggggtcattgggtaccttgatttatcttgac |
40328364 |
T |
|
| Q |
111 |
aataatcatagatcacatggttcatacgaacccacctataccttctagcttcaatggcactaagagcttgatattcaaccccttcccaccaatttcttgg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40328365 |
aataatcatagatcacatggttcatacgaacccacctataccttctagcttcaatggcactaagagcttgatattcaaccccttcccaccaattttttgg |
40328464 |
T |
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| Q |
211 |
gttagtggaacatg |
224 |
Q |
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|||||||||||||| |
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| T |
40328465 |
gttagtggaacatg |
40328478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 40318191 - 40318404
Alignment:
| Q |
11 |
tgaattaatgtttataaatatatgtatagtttggttttggacatttaaatgcctgaaagacactcatgtggggtcattgggtaccttgatttatcttgac |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40318191 |
tgaattaatgtttataaatatatgtatagtttggttttggacatttaaatgcctgaaagacactcatgtggggtcattgggtaccttgatttatcttgac |
40318290 |
T |
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| Q |
111 |
aataatcatagatcacatggttcatacgaacccacctataccttctagcttcaatggcactaagagcttgatattcaaccccttcccaccaatttcttgg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
40318291 |
aataatcatagatcacatggttcatacgaacccacctatatcttctagcttcaatggcactaagagcttgatattcaactccttcccaccaattttttgg |
40318390 |
T |
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| Q |
211 |
gttagtggaacatg |
224 |
Q |
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|||||||||||||| |
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| T |
40318391 |
gttagtggaacatg |
40318404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 40308723 - 40308937
Alignment:
| Q |
11 |
tgaattaatgtttataaa-tatatgtatagtttggttttggacatttaaatgcctgaaagacactcatgtggggtcattgggtaccttgatttatcttga |
109 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40308723 |
tgaattaatgtttataaaatatatgtatagtttggttttggacatttaaatgcctgaaagacactcatgtggggtcattgggtaccttgatttatcttga |
40308822 |
T |
|
| Q |
110 |
caataatcatagatcacatggttcatacgaacccacctataccttctagcttcaatggcactaagagcttgatattcaaccccttcccaccaatttcttg |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
40308823 |
caataatcatagatcacatggttcatacgaacccacctatatcttctagcttcaatggcactaagagcttgatattcaactccttcccaccaattttttg |
40308922 |
T |
|
| Q |
210 |
ggttagtggaacatg |
224 |
Q |
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||||||||||||||| |
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| T |
40308923 |
ggttagtggaacatg |
40308937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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