View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14928_low_5 (Length: 498)

Name: NF14928_low_5
Description: NF14928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14928_low_5
NF14928_low_5
[»] chr7 (5 HSPs)
chr7 (148-258)||(30512620-30512729)
chr7 (101-259)||(5610655-5610814)
chr7 (19-102)||(5610525-5610608)
chr7 (411-475)||(5611043-5611107)
chr7 (18-96)||(30512440-30512518)
[»] chr4 (3 HSPs)
chr4 (145-259)||(32698522-32698636)
chr4 (18-102)||(32698350-32698434)
chr4 (411-475)||(32698867-32698931)
[»] chr3 (2 HSPs)
chr3 (18-95)||(22509201-22509278)
chr3 (25-74)||(39820054-39820103)
[»] chr6 (2 HSPs)
chr6 (426-473)||(1171120-1171167)
chr6 (421-472)||(20391897-20391948)
[»] chr2 (1 HSPs)
chr2 (156-241)||(23862264-23862349)


Alignment Details
Target: chr7 (Bit Score: 83; Significance: 4e-39; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 148 - 258
Target Start/End: Original strand, 30512620 - 30512729
Alignment:
Q  148 aatagcagaaaatcagagaaacatgaacaacacaagcgcacgacaacgaccacgatggcttgatatgaaaagaagaacagaaatcgaaaacgatagaggc 247  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||  ||| |||||||||||||||||||||||    
T  30512620 aatagcagaaaatcagagaaacgtgaacaacacaagcgcacgacaa-gaccacgatggcttgatgtgaaaatgagatcagaaatcgaaaacgatagaggc 30512718  T
Q  248 atactcgattg 258  Q
    |||||||||||    
T  30512719 atactcgattg 30512729  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 101 - 259
Target Start/End: Original strand, 5610655 - 5610814
Alignment:
Q  101 catcacagaagctttatggaattgattgtcaacgnnnnnnnnnn-caaaatagcagaaaatcagagaaacatgaacaacacaagcgcacgacaacgacca 199  Q
    |||||||||||||||||||||||| |||||||||           ||||| |||||||||||| ||||| |||||  ||||||||||||| |||||||||    
T  5610655 catcacagaagctttatggaattgtttgtcaacgaacaaaaacaacaaaacagcagaaaatcaaagaaatatgaagcacacaagcgcacggcaacgacca 5610754  T
Q  200 cgatggcttgatatgaaaagaagaacagaaatcgaaaacgatagaggcatactcgattgc 259  Q
    |||||| ||||||||||||| |||  | |||||||||| ||||||||| |||||||||||    
T  5610755 cgatggattgatatgaaaaggagataaaaaatcgaaaatgatagaggcctactcgattgc 5610814  T

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Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 5610525 - 5610608
Alignment:
Q  19 aatctaattcaataaatccaaatttttactcaaactaattcttctcaagttgattcagcataaacagaagaagaaaaacaagca 102  Q
    |||||||  |||||||||||| ||||||||||||| |||||||||||| |||||||| || |||||||||||||||||||||||    
T  5610525 aatctaaagcaataaatccaattttttactcaaaccaattcttctcaaattgattcaacacaaacagaagaagaaaaacaagca 5610608  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 411 - 475
Target Start/End: Original strand, 5611043 - 5611107
Alignment:
Q  411 caaacatgtaggtttgggatgaatttgttgtgttgaattgagtttagcttgaagaagaaaggttg 475  Q
    |||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  5611043 caaacatgaaggtttgggatgaatttgctgtgttaaattgagtttagcttgaagaagaaaggttg 5611107  T

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Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 30512440 - 30512518
Alignment:
Q  18 caatctaattcaataaatccaaatttttactcaaactaattcttctcaagttgattcagcataaacagaagaagaaaaa 96  Q
    ||||||||  |||||||||||| || |||||||||| |||||||||||| |||||||| || |||||||||||||||||    
T  30512440 caatctaaagcaataaatccaatttattactcaaaccaattcttctcaaattgattcaacacaaacagaagaagaaaaa 30512518  T

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Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 145 - 259
Target Start/End: Original strand, 32698522 - 32698636
Alignment:
Q  145 caaaatagcagaaaatcagagaaacatgaacaacacaagcgcacgacaacgaccacgatggcttgatatgaaaagaagaacagaaatcgaaaacgataga 244  Q
    ||||| ||||||||||||||||||||||||  ||||||||||||| ||||||||||||||| ||||||||||||| |||  | |||||||||| ||||||    
T  32698522 caaaacagcagaaaatcagagaaacatgaagcacacaagcgcacggcaacgaccacgatggattgatatgaaaaggagataaaaaatcgaaaatgataga 32698621  T
Q  245 ggcatactcgattgc 259  Q
    ||| |||| ||||||    
T  32698622 ggcctacttgattgc 32698636  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 32698350 - 32698434
Alignment:
Q  18 caatctaattcaataaatccaaatttttactcaaactaattcttctcaagttgattcagcataaacagaagaagaaaaacaagca 102  Q
    ||||||||  |||||||||||| ||||||||||||| |||||||||||| |||||||| || |||||||||||||||||||||||    
T  32698350 caatctaaagcaataaatccaattttttactcaaaccaattcttctcaaattgattcaacacaaacagaagaagaaaaacaagca 32698434  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 411 - 475
Target Start/End: Original strand, 32698867 - 32698931
Alignment:
Q  411 caaacatgtaggtttgggatgaatttgttgtgttgaattgagtttagcttgaagaagaaaggttg 475  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  32698867 caaacatgtaggtttgggatgaatttgctgtgttaaattgagtttagcttgaagaagaaaggttg 32698931  T

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Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 22509278 - 22509201
Alignment:
Q  18 caatctaattcaataaatccaaatttttactcaaactaattcttctcaagttgattcagcataaacagaagaagaaaa 95  Q
    ||||||||  |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  22509278 caatctaaagcaataaatccaattttttactcaaactaattcttctcaaattgattcagcataaacagaagaagaaaa 22509201  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 39820103 - 39820054
Alignment:
Q  25 attcaataaatccaaatttttactcaaactaattcttctcaagttgattc 74  Q
    |||||| |||||||||||||||||||||| |||| || |||| |||||||    
T  39820103 attcaacaaatccaaatttttactcaaaccaatttttttcaaattgattc 39820054  T

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Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 426 - 473
Target Start/End: Original strand, 1171120 - 1171167
Alignment:
Q  426 gggatgaatttgttgtgttgaattgagtttagcttgaagaagaaaggt 473  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1171120 gggatgaatttgttgtgttgatttgagtttagcttgaagaagaaaggt 1171167  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 421 - 472
Target Start/End: Original strand, 20391897 - 20391948
Alignment:
Q  421 ggtttgggatgaatttgttgtgttgaattgagtttagcttgaagaagaaagg 472  Q
    |||||||||||||||||||||||||| |||||||||| |||| |||||||||    
T  20391897 ggtttgggatgaatttgttgtgttgatttgagtttaggttgatgaagaaagg 20391948  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 241
Target Start/End: Complemental strand, 23862349 - 23862264
Alignment:
Q  156 aaaatcagagaaacatgaacaacacaagcgcacgacaacgaccacgatggcttgatatgaaaagaagaacagaaatcgaaaacgat 241  Q
    ||||||| || |||||||||||||||||| ||| ||| ||||||  |||||||  | ||||||| ||| | || ||||||||||||    
T  23862349 aaaatcaaagtaacatgaacaacacaagcacacaacatcgaccattatggcttcgtttgaaaaggagatctgacatcgaaaacgat 23862264  T

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