View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14928_low_6 (Length: 453)
Name: NF14928_low_6
Description: NF14928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14928_low_6 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 12 - 437
Target Start/End: Complemental strand, 42730826 - 42730401
Alignment:
| Q |
12 |
atgaacagaagaaatagttcccataaaccaactaatcctagaagaatcctcagtttcaaaaggcattttgaatctcataccagaacaccattgaatttgc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42730826 |
atgaacagaagaaatagttcccataaaccaactaatcctagaagaatcctcagtttcaaaaggcattttgaatctcataccagaacaccattgaatttgc |
42730727 |
T |
|
| Q |
112 |
attgcagatttaactgaagaaaccttaacacaaaattcaggagtactagctcttggataatacacaacctcaaaagatcttccattaacagcacaattta |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42730726 |
attgcagatttaactgaagaaaccttaacacaaaattcaggagtactagctcttggataatacacaacctcaaaagatcttccattaacagcacaattta |
42730627 |
T |
|
| Q |
212 |
cagcttcaacaacagattcagctcctacttttcccatcaaatcatcacaaccattttttctgttatcatttccacacaagaaaccagaaccaacaccacc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42730626 |
cagcttcaacaacagattcagctcctacttttcccatcaaatcatcacaaccattttttctgttatcatttccacacaagaaaccagaaccaacaccacc |
42730527 |
T |
|
| Q |
312 |
aaacataggtgatacacggttccaagtactagaagaattagaaaactgatcagttccaccaccaattccacctttctttgctctccttataccaacacaa |
411 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42730526 |
aaacaaaggtgatacacggttccaagtactagaagaattagaaaactgatcagttccaccaccaattccacctttctttgctctccttataccaacacaa |
42730427 |
T |
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| Q |
412 |
agatctccattttctgctctcaaaaa |
437 |
Q |
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|||||||||||||||||||||||||| |
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| T |
42730426 |
agatctccattttctgctctcaaaaa |
42730401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 116
Target Start/End: Complemental strand, 28347416 - 28347329
Alignment:
| Q |
29 |
ttcccataaaccaactaatcctagaagaatcctcagtttcaaaaggcattttgaatctcataccagaacaccattgaatttgcattgc |
116 |
Q |
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| T |
28347416 |
ttcccataaaccaacttattcgagacgaatcctcggtttcaaaggccatcttgaatcttattccagaacaccatcgaatctgcattgc |
28347329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 40352082 - 40352254
Alignment:
| Q |
13 |
tgaacagaagaaatagttcccataaaccaactaatcctagaagaatcctcagtttcaaaaggcattttgaatctcataccagaacaccattgaatttgca |
112 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| || ||||| || || ||||| |||||||||||||||||| || |
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| T |
40352082 |
tgaacagaagaaatagttcccatgaaccaactaatcctagaagaatcttcggtttcgaatggcatcttaaacctcatcccagaacaccattgaattctca |
40352181 |
T |
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| Q |
113 |
ttgcagatttaactgaagaaaccttaacacaaaattcaggagtactagctcttggataatacacaacctcaaa |
185 |
Q |
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| |||| |||||| | ||| ||||| |||||| ||||||||||| ||||| |||||||| || |||||||| |
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| T |
40352182 |
tagcagctttaacagctgaagtcttaatacaaaactcaggagtacttgctctaggataataaactacctcaaa |
40352254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 21716355 - 21716183
Alignment:
| Q |
13 |
tgaacagaagaaatagttcccataaaccaactaatcctagaagaatcctcagtttcaaaaggcattttgaatctcataccagaacaccattgaatttgca |
112 |
Q |
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|||||||||| || ||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||| ||||| ||||||||||||||||| || |
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| T |
21716355 |
tgaacagaagcgattgttcccataaaccaactaatcctagaagagtcttcagtttcaaagggcatcttgaacctcatcccagaacaccattgaatcctca |
21716256 |
T |
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| Q |
113 |
ttgcagatttaactgaagaaaccttaacacaaaattcaggagtactagctcttggataatacacaacctcaaa |
185 |
Q |
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| T |
21716255 |
tagcagccttcacagctgaagccttaacacagaactcaggagtgctagctcttggatagtaaacaacttcaaa |
21716183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 51742244 - 51742176
Alignment:
| Q |
37 |
aaccaactaatcctagaagaatcctcagtttcaaaaggcattttgaatctcataccagaacaccattgaatt |
108 |
Q |
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||||||||||| ||||||||||||||||||| || ||||| || || |||| ||||||||||||||||||| |
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| T |
51742244 |
aaccaactaatactagaagaatcctcagttt--aatggcatctt-aaactcacaccagaacaccattgaatt |
51742176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 96441 - 96356
Alignment:
| Q |
16 |
acagaagaaatagttcccataaaccaactaatcctagaagaatcctcagtttcaaaaggcattttgaatctcataccagaacacca |
101 |
Q |
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| T |
96441 |
acagaagcaacagttccgataaaccaacttatccttgatgagtcctcggtttcaatgggcatcttgaacctcattccaggacacca |
96356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 88436 - 88348
Alignment:
| Q |
13 |
tgaacagaagaaatagttcccataaaccaactaatcctagaagaatcctcagtttcaaaaggcattttgaatctcataccagaacacca |
101 |
Q |
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|||||||||| || |||||| ||||||||||| ||||| || || ||||| ||||||| | ||| ||||| ||||| |||| |||||| |
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| T |
88436 |
tgaacagaagcaacagttccgataaaccaacttatccttgatgagtcctcggtttcaatggccatcttgaacctcattccaggacacca |
88348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 40869841 - 40869926
Alignment:
| Q |
16 |
acagaagaaatagttcccataaaccaactaatcctagaagaatcctcagtttcaaaaggcattttgaatctcataccagaacacca |
101 |
Q |
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||||||| || |||||| ||||||||||| ||||| || || ||||| ||||||| ||||| ||||| ||||| |||| |||||| |
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| T |
40869841 |
acagaagcaacagttccgataaaccaacttatccttgatgagtcctcggtttcaatgggcatcttgaacctcattccaggacacca |
40869926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 40877847 - 40877935
Alignment:
| Q |
13 |
tgaacagaagaaatagttcccataaaccaactaatcctagaagaatcctcagtttcaaaaggcattttgaatctcataccagaacacca |
101 |
Q |
| |
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|||||||||| || |||||| ||||||||||| ||||| || || ||||| ||||||| | ||| ||||| ||||| |||| |||||| |
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| T |
40877847 |
tgaacagaagcaacagttccgataaaccaacttatccttgatgagtcctcggtttcaatggccatcttgaacctcattccaggacacca |
40877935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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