View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14928_low_7 (Length: 436)
Name: NF14928_low_7
Description: NF14928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14928_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 3 - 418
Target Start/End: Original strand, 22757612 - 22758027
Alignment:
| Q |
3 |
tctggtaccagaatctaatgtaagattgtagcttctcttcttgattcttaaatatttttatggtcaaacttagattcttttctttgatttgtttggattt |
102 |
Q |
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| T |
22757612 |
tctggtaccagaatctaatgtaagattgtagcttctcttcttgattcttaaatatttttatggtcaaacttagattcttttctttaatttgtttggattt |
22757711 |
T |
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| Q |
103 |
ctaatggaccaaatttgcttagcaaactgagcctacaagccttgatccttgtcctgctgaacctccaagaccaagaactcactccttcagcaaggtctta |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22757712 |
ctaatggaccaaatttgcttagcaaactgagcctacaagccttgatccttgtcctgctgaacctccaagaccaagaactcactccttcagcaaggtctta |
22757811 |
T |
|
| Q |
203 |
actaactccgatacaagtactcatggtggcttttctgttcttcggaagcatgccacagaatgccttccatcactggtaataacaccatatttatggtttt |
302 |
Q |
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| T |
22757812 |
actaactccgatacaagtactcatggtggcttttctgttcttcggaagcatgccacagaatgccttccatcactggtaataacaccatctttatggtttt |
22757911 |
T |
|
| Q |
303 |
taacagaattcgtgttaacaaatccaattttcttttgtgaaatttactaaaaccatgtcttgattttgtttaggatatgtcccagtctactccaactcag |
402 |
Q |
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| T |
22757912 |
taacagaattcgtgttaacaaatccaattttcttttgtgaaatttactaaaaccatgtcttgattttgtttaggatatgtcccagtctactccaactcag |
22758011 |
T |
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| Q |
403 |
gaattggttgctaagg |
418 |
Q |
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| T |
22758012 |
gaattggttgctaagg |
22758027 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 7076598 - 7076540
Alignment:
| Q |
212 |
gatacaagtactcatggtggcttttctgttcttcggaagcatgccacagaatgccttcc |
270 |
Q |
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| T |
7076598 |
gatactagtacacatggtggcttctctgttctcaggaaacatgccacagaatgccttcc |
7076540 |
T |
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