View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14928_low_8 (Length: 368)

Name: NF14928_low_8
Description: NF14928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14928_low_8
NF14928_low_8
[»] chr5 (2 HSPs)
chr5 (13-354)||(3234526-3234873)
chr5 (62-123)||(29598383-29598444)
[»] chr7 (10 HSPs)
chr7 (48-218)||(18325376-18325546)
chr7 (49-219)||(22020536-22020706)
chr7 (62-200)||(16840135-16840273)
chr7 (62-200)||(16847218-16847356)
chr7 (62-191)||(16841691-16841820)
chr7 (54-140)||(22027807-22027893)
chr7 (49-199)||(22036248-22036398)
chr7 (48-121)||(22039442-22039515)
chr7 (264-353)||(22020748-22020837)
chr7 (73-131)||(22087779-22087837)
[»] chr2 (2 HSPs)
chr2 (53-132)||(10206230-10206311)
chr2 (307-347)||(10206024-10206064)


Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 13 - 354
Target Start/End: Complemental strand, 3234873 - 3234526
Alignment:
Q  13 ctcccacaaccgaaattgcagtgtcggtacgctgtgtcatcgccgataatcctccctgtagaacttatcacagaagtgctttctttccttcctgcgaaa- 111  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  3234873 ctcccaccaccgaaatcgcagtgtcggtacgctgtgtcatcgccgataatcctccctgtagaacttatcacagaagtgctttctttccttcctgtgaaaa 3234774  T
Q  112 -tctctgatgcgaatgaagtgctgctgtaaatcttggaatgccttcatatccgatcctttctttgtcaagttgcaccttcaacgatctacgagaaaccct 210  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3234773 atctctgatgcgaatgaagtgctgctgtaaatcttggaatgccttcatatccgatcctttctttgtcaagttgcaccttcaacgatctacgcgaaaccct 3234674  T
Q  211 cacctcacacttgcatcca----gacgtacacgacctacagagcatagcagtgttgtaccaatctccttgagtcgtttgctggagagtccttcaaattcg 306  Q
    |||||||||||||||| ||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3234673 cacctcacacttgcatgcatctagacgtacacgacctacagagcatagcagtgttgtaccaatctccttgagtcgtttgctggagagtccatcaaattcg 3234574  T
Q  307 atcacctttaccgaagatccttactataatttgaaggataaagattgt 354  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||    
T  3234573 atcacccttaccgaagatccttactataatttgaaggataaagattgt 3234526  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 29598444 - 29598383
Alignment:
Q  62 tcctccctgtagaacttatcacagaagtgctttctttccttcctgcgaaatctctgatgcga 123  Q
    |||||||||  ||||| ||| ||||||| ||||| |||||||||| | ||||||||||||||    
T  29598444 tcctccctgatgaactcatcgcagaagtcctttcattccttcctgtgcaatctctgatgcga 29598383  T

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Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 48 - 218
Target Start/End: Original strand, 18325376 - 18325546
Alignment:
Q  48 gtcatcgccgataatcctccctgtagaacttatcacagaagtgctttctttccttcctgcgaaatctctgatgcgaatgaagtgctgctgtaaatcttgg 147  Q
    ||||||||||||||||||||| |  |||||||||||||||||||||||||  ||||||| ||||||||| |||| | | |||||||| |||||||| |||    
T  18325376 gtcatcgccgataatcctccccgatgaacttatcacagaagtgctttcttatcttcctgtgaaatctcttatgcaactaaagtgctgttgtaaatcatgg 18325475  T
Q  148 aatgccttcatatccgatcctttctttgtcaagttgcaccttcaacgatctacgagaaaccctcacctcac 218  Q
    ||  || || | ||| | ||||||||  ||| ||||||||||||||| ||| | | |||||||||| ||||    
T  18325476 aacaccctcgtgtccaaacctttcttcatcaggttgcaccttcaacgttcttcaaaaaaccctcacttcac 18325546  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 49 - 219
Target Start/End: Original strand, 22020536 - 22020706
Alignment:
Q  49 tcatcgccgataatcctccctgtagaacttatcacagaagtgctttctttccttcctgcgaaatctctgatgcgaatgaagtgctgctgtaaatcttgga 148  Q
    |||||||||||||| |||||||  ||  ||||||||||| |||||||||||||||| | |||||||||||||||||||||||||   ||||| || ||||    
T  22020536 tcatcgccgataattctccctgatgagattatcacagaactgctttctttccttccagtgaaatctctgatgcgaatgaagtgcgtttgtaagtcatgga 22020635  T
Q  149 atgccttcatatccgatcctttctttgtcaagttgcaccttcaacgatctacgagaaaccctcacctcaca 219  Q
    |     | |||||| || ||| ||||||| | ||||||||||| ||||||||| |||||||||| ||||||    
T  22020636 aaataataatatccaattcttcctttgtcgaattgcaccttcaccgatctacgcgaaaccctcaactcaca 22020706  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 62 - 200
Target Start/End: Complemental strand, 16840273 - 16840135
Alignment:
Q  62 tcctccctgtagaacttatcacagaagtgctttctttccttcctgcgaaatctctgatgcgaatgaagtgctgctgtaaatcttggaatgccttcatatc 161  Q
    |||||||||  |||||||||  ||||||||||||||||||||||| |||| |||| |||||| ||| || |||||||||||| |||||  || || ||||    
T  16840273 tcctccctgacgaacttatcgtagaagtgctttctttccttcctgtgaaaactcttatgcgactgaggtcctgctgtaaatcgtggaactccctcgtatc 16840174  T
Q  162 cgatcctttctttgtcaagttgcaccttcaacgatctac 200  Q
    | ||||||| || ||||||| ||||||||| || |||||    
T  16840173 caatcctttattcgtcaagtcgcaccttcagcgttctac 16840135  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 62 - 200
Target Start/End: Complemental strand, 16847356 - 16847218
Alignment:
Q  62 tcctccctgtagaacttatcacagaagtgctttctttccttcctgcgaaatctctgatgcgaatgaagtgctgctgtaaatcttggaatgccttcatatc 161  Q
    |||||||||  |||||||||  |||||||||||||||||||||||  ||| |||| |||||| ||| || |||||||||||| |||||  || || ||||    
T  16847356 tcctccctgacgaacttatcgtagaagtgctttctttccttcctgttaaaactcttatgcgactgaggtcctgctgtaaatcgtggaactccctcgtatc 16847257  T
Q  162 cgatcctttctttgtcaagttgcaccttcaacgatctac 200  Q
    ||||||||| || ||||||| ||||||||| || |||||    
T  16847256 cgatcctttattcgtcaagtcgcaccttcagcgttctac 16847218  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 62 - 191
Target Start/End: Complemental strand, 16841820 - 16841691
Alignment:
Q  62 tcctccctgtagaacttatcacagaagtgctttctttccttcctgcgaaatctctgatgcgaatgaagtgctgctgtaaatcttggaatgccttcatatc 161  Q
    |||||||||  || ||||||  ||||||||||||||||||||||| |||| |||| |||||| | | || |||||||||||| |  ||  || || ||||    
T  16841820 tcctccctgacgaccttatcgtagaagtgctttctttccttcctgtgaaaactcttatgcgactaaggtcctgctgtaaatcgtcaaactccctcgtatc 16841721  T
Q  162 cgatcctttctttgtcaagttgcaccttca 191  Q
    ||||||||| || ||||||| |||||||||    
T  16841720 cgatcctttattcgtcaagtcgcaccttca 16841691  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 140
Target Start/End: Original strand, 22027807 - 22027893
Alignment:
Q  54 gccgataatcctccctgtagaacttatcacagaagtgctttctttccttcctgcgaaatctctgatgcgaatgaagtgctgctgtaa 140  Q
    |||||||||||| ||||  ||||||||||||||| |||||||||| ||||| |  ||||||||||| ||| | |||||||| |||||    
T  22027807 gccgataatccttcctgacgaacttatcacagaactgctttcttttcttcccgtcaaatctctgatccgattcaagtgctgttgtaa 22027893  T

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Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 49 - 199
Target Start/End: Original strand, 22036248 - 22036398
Alignment:
Q  49 tcatcgccgataatcctccctgtagaacttatcacagaagtgctttctttccttcctgcgaaatctctgatgcgaatgaagtgctgctgtaaatcttgga 148  Q
    ||||| ||||||||||||||| | || |||||||||||| |||||||||||||||| |  ||||||||| ||| | | | ||||   ||||  || ||||    
T  22036248 tcatcaccgataatcctccctcttgaccttatcacagaactgctttctttccttccggtcaaatctctgctgcaattcaggtgcgtttgtatgtcatgga 22036347  T
Q  149 atgccttcatatccgatcctttctttgtcaagttgcaccttcaacgatcta 199  Q
    |   | | ||||||||| ||||||| ||||| ||||||||||| |||||||    
T  22036348 aaatcctaatatccgattctttcttcgtcaaattgcaccttcagcgatcta 22036398  T

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Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 22039442 - 22039515
Alignment:
Q  48 gtcatcgccgataatcctccctgtagaacttatcacagaagtgctttctttccttcctgcgaaatctctgatgc 121  Q
    ||||| |||||||||||||||||  ||  ||||||||||| |||||||||||||||| |  |||||||||||||    
T  22039442 gtcattgccgataatcctccctgatgagattatcacagaactgctttctttccttccggtcaaatctctgatgc 22039515  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 353
Target Start/End: Original strand, 22020748 - 22020837
Alignment:
Q  264 accaatctccttgagtcgtttgctggagagtccttcaaattcgatcacctttaccgaagatccttactataatttgaaggataaagattg 353  Q
    ||||||||||||||||| |||| |||||||||| || ||  | || ||| ||||||| ||||||||||||  |||||| ||||| |||||    
T  22020748 accaatctccttgagtcatttgttggagagtccatcgaagcccataacccttaccgacgatccttactatcttttgaatgataaggattg 22020837  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 131
Target Start/End: Original strand, 22087779 - 22087837
Alignment:
Q  73 gaacttatcacagaagtgctttctttccttcctgcgaaatctctgatgcgaatgaagtg 131  Q
    ||||||||||||||||||||||| |||||| |||  |||||||| |||||  |||||||    
T  22087779 gaacttatcacagaagtgctttccttcctttctgtcaaatctctcatgcggctgaagtg 22087837  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 132
Target Start/End: Complemental strand, 10206311 - 10206230
Alignment:
Q  53 cgccgataatcctccctgtagaacttatcaca--gaagtgctttctttccttcctgcgaaatctctgatgcgaatgaagtgc 132  Q
    ||||||||||||||||||  |||||||||| |  |||||||||||||||||||| | ||||||||| |||||| ||||||||    
T  10206311 cgccgataatcctccctgacgaacttatcatatagaagtgctttctttccttcccgtgaaatctctaatgcgactgaagtgc 10206230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 347
Target Start/End: Complemental strand, 10206064 - 10206024
Alignment:
Q  307 atcacctttaccgaagatccttactataatttgaaggataa 347  Q
    |||||| |||||||||||||||||||| | |||||||||||    
T  10206064 atcacccttaccgaagatccttactatcaattgaaggataa 10206024  T

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