View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14929_high_11 (Length: 227)
Name: NF14929_high_11
Description: NF14929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14929_high_11 |
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| [»] chr1 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 8 - 227
Target Start/End: Complemental strand, 29285180 - 29284961
Alignment:
| Q |
8 |
ctattactgtttatttctgcataagtgcttactataaagtttgtagctcttactaattacattttcttttctttctgtagtttatttacctgttagccta |
107 |
Q |
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| T |
29285180 |
ctattactgtttatttctgcataagtgcttactataaagtttgtagctcttactaattacattttcttttctttctgtagtttatttacctgttagccta |
29285081 |
T |
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| Q |
108 |
aagagtgcacaacattttaagcgactattacaaaaaccagattttgggccacagttcgagcacttgcacgtggataggaagtaataataggcttgcttct |
207 |
Q |
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| T |
29285080 |
aagagtgcacaatattttaagcgactattacaaaaaccagattttgggccacagttcgagcacttgcacgtggataggaagtaataataggcttgcttct |
29284981 |
T |
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| Q |
208 |
cttcacaccagttgctttct |
227 |
Q |
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|||||||||||||||||||| |
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| T |
29284980 |
cttcacaccagttgctttct |
29284961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 35233085 - 35232858
Alignment:
| Q |
7 |
tctattactgtttatttctgcataagtgcttactataaagtttgtagctcttactaattacattttcttttctttc------tgtagtttatttacctgt |
100 |
Q |
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||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
35233085 |
tctattactgtttatttctgcataagttcttactctaaagtttgtagctcttactaattacattttcttttcttttcttttatgttgtttatttacctgt |
35232986 |
T |
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| Q |
101 |
tagcctaaagagtgcacaacattttaagcgact-attacaaaaaccagattttgggccacagttcgagcacttgcacgtggataggaagtaataataggc |
199 |
Q |
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| T |
35232985 |
tagcctaaagagtgcacaatattttaagcgactgattacaaaaaccagattttgggccacagttcgagcacttgcacatggataggaagtaataataggc |
35232886 |
T |
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| Q |
200 |
ttgcttctcttcacaccagttgctttct |
227 |
Q |
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| T |
35232885 |
ttgcttctcttcacaccagctgctttct |
35232858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 26000073 - 26000007
Alignment:
| Q |
161 |
gttcgagcacttgcacgtggataggaagtaataataggcttgcttctcttcacaccagttgctttct |
227 |
Q |
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| T |
26000073 |
gttcgagcacttgcccgtggatatgaagtaataatgggcttgctactcttcacaccagtagctttct |
26000007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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