View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14929_high_3 (Length: 526)
Name: NF14929_high_3
Description: NF14929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14929_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 141 - 508
Target Start/End: Complemental strand, 14202899 - 14202532
Alignment:
| Q |
141 |
ttctcatcatgaccaatttatggagtagtcatattgggtgcttgaatatcatttcaaaacagttttcagcacttagaaatgtttattctcactctttgaa |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14202899 |
ttctcatcatgaccaatttatggagtagtcatattgggtgcttgaatatcatttcaaaacagttttcagcacttagaaatgtttattctcactctttgaa |
14202800 |
T |
|
| Q |
241 |
ctataaagtatttccgtagcagctaagtaatttttatagnnnnnnnnnnccttaaccatccaattctaataagggaaagggggcattaattaataatttc |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14202799 |
ctataaagtatttccgtagcagctaagtaatttttatagttttttttttccttaaccatccaattctaataagggaaaggggacattaattaataatttc |
14202700 |
T |
|
| Q |
341 |
gaattcttctaaataagtaatcatgattgaaagttattaattatttgaacacaatcaattgataaataatttttacggtttatatgacacactagaattt |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14202699 |
gaattcttctaaataagtaatcatgattgaaagttattaattatttgaacacaatcaattgataaataatttttacggtttatatgacacactagaattt |
14202600 |
T |
|
| Q |
441 |
ctttaataaatttgcttagcacaaaaagtagaataaaagttggggaattgatgaattgtgtaaagact |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14202599 |
ctttaataaatttgcttagcacaaaaagtagaataaaagttggggaattgatgaattgtgcaaagact |
14202532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 14203293 - 14203215
Alignment:
| Q |
13 |
attttgttggaatataatcttttgaattgctattttaagtaattatttattactagttctattattggcaaggacaata |
91 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14203293 |
attttgtaggaatataatcttttgaattgctattttaagtaattatttattactagttctattattggcaaggacaata |
14203215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 219 - 254
Target Start/End: Complemental strand, 14202932 - 14202897
Alignment:
| Q |
219 |
atgtttattctcactctttgaactataaagtatttc |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
14202932 |
atgtttattctcactctttgaactataaagtatttc |
14202897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University