View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14929_high_5 (Length: 479)
Name: NF14929_high_5
Description: NF14929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14929_high_5 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 74 - 479
Target Start/End: Original strand, 25742870 - 25743270
Alignment:
| Q |
74 |
catgtaaatcagataattctcctagttcatcaatggaagatccatattcttttcctatgaaaaagtcacttagtttttgtaggtttgtcaatgcacataa |
173 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25742870 |
catgtaaatcagataattctcctatttcatcaatggaagatccatattcttttcctatgaaaaagtcacttagtttttgtaggtttgtcaatgcacataa |
25742969 |
T |
|
| Q |
174 |
atgcaatggcatccatttcaaactcgtacaagtaatatctaagtaacgcaggttaactaacctatgaaaatctttaggaagttcttgtaggttagtacat |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
25742970 |
atgcaatggcatccatttcaaactcgtacaagtaatatctaagtaacgcaggttaactaacctatgaaaatctttagga-----ttgtaggttagtacat |
25743064 |
T |
|
| Q |
274 |
ccaactagtttcaaagtttccaaattgtacagacaaccaatgctttcccgcaatatgttcatcttagctccagacagatctagataccgaagatgtatta |
373 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
25743065 |
ccaactagcttcaaagtttccaaattgtacagacaaccgatgctttcccgcaatatgttcatcttagccccagacagatctagataccgaagatgtatta |
25743164 |
T |
|
| Q |
374 |
gttcggtaactgaatcaggcaaccccttatgatagatgccttccaaagataacacccttaaacacttgagcttgatcaacaagtcatgtagaatctcatc |
473 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
25743165 |
gttcggtaactgaatcaggcaaccccttatgatagatgccttccaaagataacacccttaatgacttgagcttgatcaacaagtcatgtggaatctcatc |
25743264 |
T |
|
| Q |
474 |
aataaa |
479 |
Q |
| |
|
|||||| |
|
|
| T |
25743265 |
aataaa |
25743270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 25742821 - 25742871
Alignment:
| Q |
1 |
tccttttcattcaacttggccttttctgaatccacatagctaaaatgttca |
51 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
25742821 |
tccttttcattcaacttggccttttctgaatccacatagctaacatgttca |
25742871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 196
Target Start/End: Complemental strand, 18086660 - 18086522
Alignment:
| Q |
58 |
tgaatgaacagtgatccatgtaaatcagataattctcctagttcatcaatggaagatccatattcttttcctatgaaaaagtcacttagtttttgtaggt |
157 |
Q |
| |
|
|||||||||| |||||||||||||| | ||| ||||| |||||| |||||||||||||| |||| || | ||||||||||| | ||||| |||| |
|
|
| T |
18086660 |
tgaatgaacaatgatccatgtaaattacatagctctcccagttcactaatggaagatccatgatcttcaccaacaaaaaagtcactcaacttttgaaggt |
18086561 |
T |
|
| Q |
158 |
ttgtcaatgcacataaatgcaatggcatccatttcaaac |
196 |
Q |
| |
|
|| ||||| ||| | |||||||||||||| ||||||| |
|
|
| T |
18086560 |
ttttcaattcactgatttgcaatggcatccacttcaaac |
18086522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University