View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14929_low_10 (Length: 322)
Name: NF14929_low_10
Description: NF14929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14929_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 307
Target Start/End: Original strand, 23996478 - 23996769
Alignment:
| Q |
16 |
atgaatattgaaaaagggaacggcattgataatatttcaattgaagcaacctctgattctgatttacctgccatgctcaatgcctttgagattttcaggg |
115 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23996478 |
atgaatattgaaaaaggaaacggcattgataatatttcaattgaagcaacctctgattctgatttacctgccatgctcaatgcctttgagattttcaggg |
23996577 |
T |
|
| Q |
116 |
taatacctgagacctttttagccacgcaacaagccgatggtaagtttctcctattatgactaaggatcctcacattttcgtacaaataagataaatcttg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23996578 |
taatacctgagacctttttagccacgcaacaagccgatggtaagtttctcctattatgactaaggatcctcacattttcgtacaaataagataaatcttg |
23996677 |
T |
|
| Q |
216 |
catcatgtataagttattttttataattagattaataaatctcactattagatcgaatgtgatatgagacttattgatccaatggtaaaaaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23996678 |
catcatgtataagttattttttataattagattaataaatctcactattagatcgaatgtgatatgagacttattgatccaatggtaaaaaa |
23996769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 23967876 - 23967689
Alignment:
| Q |
16 |
atgaatattgaaaaagggaacggcattgataatatttcaattgaagcaacctctgattctgatttacctgccatgctcaatgcctttgagattttcaggg |
115 |
Q |
| |
|
||||| |||||||||||||| |||||| | ||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||| | ||| |
|
|
| T |
23967876 |
atgaaaattgaaaaagggaagggcattaaaaatatttttattgaagcaacctctgattctgaattacctgctatgctcaatgcctttgagatttactggg |
23967777 |
T |
|
| Q |
116 |
taatacctgagacctttttagccacgcaacaagccgatggtaagtttctcctattatgact-aaggatcctcacattttcgtacaaat |
202 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||| ||||||| |
|
|
| T |
23967776 |
taatacctgagaccgtttcagccacgcaacaagacgatggtaagtttctcctattatgagtaaaggatcctcacattttcatacaaat |
23967689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 195 - 307
Target Start/End: Complemental strand, 23967670 - 23967555
Alignment:
| Q |
195 |
gtacaaataagataaatcttgcatcatgtataagttattttttataattagattaataaatctcactattagatcgaatgtgat---atgagacttattg |
291 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||| |||| ||| ||||||| ||||| |
|
|
| T |
23967670 |
gtacaaataagataagtcttgcatcatgtataagttattttttataattagactaataaatctcactatgatatcaaatgagatatgatgagacctattg |
23967571 |
T |
|
| Q |
292 |
atccaatggtaaaaaa |
307 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
23967570 |
atccaatggtgaaaaa |
23967555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 265
Target Start/End: Original strand, 12329676 - 12329742
Alignment:
| Q |
199 |
aaataagataaatcttgcatcatgtataagttattttttataattagattaataaatctcactatta |
265 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| ||| || ||||||| |||| |||| |
|
|
| T |
12329676 |
aaataagataaatcttgcatcatgtataacatattttttatcattgaatcaataaatttcaccatta |
12329742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 265
Target Start/End: Original strand, 34113644 - 34113696
Alignment:
| Q |
213 |
ttgcatcatgtataagttattttttataattagattaataaatctcactatta |
265 |
Q |
| |
|
||||||||||||||||||| ||||||| ||| || ||||||||||||||||| |
|
|
| T |
34113644 |
ttgcatcatgtataagttagtttttatcattgaatcaataaatctcactatta |
34113696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University