View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14929_low_11 (Length: 305)

Name: NF14929_low_11
Description: NF14929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14929_low_11
NF14929_low_11
[»] chr5 (1 HSPs)
chr5 (19-305)||(43184607-43184901)


Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 43184901 - 43184607
Alignment:
Q  19 ggaagtggtcaagtcaaataagtagtgctagtattactccgcatttaatcatacttttagctttgattctacacacactctctctaaaacat-------- 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  43184901 ggaagtggtcaagtcaaataagtagtgctagtattactccgcatttaatcatacttttagctttgattctacacacactctctctaaaacatgtctaaat 43184802  T
Q  111 ccctcatgatcaaattaatggccttgtattggcttttcaacagtggcaaatattatgaacctcaaaccctagaaatagggaaagaggcgatcgctttgag 210  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43184801 ccctcatgatcagattaatggccttgtattggcttttcaacagtggcaaatattatgaacctcaaaccctagaaatagggaaagaggcgatcgctttgag 43184702  T
Q  211 aaaggcaacatacttaatttacactgtctctacatgcttcttaaaaatgatctgtgaccatcttttcttcttcggtttttgtttccaccagaaac 305  Q
    |||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43184701 aaagacaacatacttaatttacactgtttccacatgcttcttaaaaatgatctgtgaccatcttttcttcttcggtttttgtttccaccagaaac 43184607  T

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